Detailed information of component protein


Summary

Component ID T6CP259568
Component protein type TssL
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (401 a.a.); Nucleotide sequence (1203 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13990
Coordinate (Strand) 606007..607209 (-)
NCBI ID WP_004934945.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI0002B88A99
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 3.8e-68 7..209
OmpA PF00691.22 1.5e-14 276..374
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-185 MAPAANPLVDAANPLLNAISQIRQSATHANPAQLRQQLIDEMRRFEIRGQRANLPYEVIIGARYCLCTALDEAAALTPWGSNSVWSGSGLLVTFHNETWGGEKFFQLLAKLSQSPREHINLLELINYCLLLGFEGRYRVMENGRSQLETMKQRLLQLIRTVRGGYAPPLSPHALDLPVQQKLWRP
Transmembrane helix 186-208 LVPLWACVALTGFLASLLFIALN
Inside 209-400 WRLGDNTSPVLAAIYQTNLPQVAIGNPAPAAPPTLSLKSFLRKEIAEGLVVVRDEAQQSVVILKGDGLFDSAATTVRANYIPVIDRIAAAMNGVSGKILVTGYSDNLPIRSARFASNWELSLARAEAVSARLQKHLANPQRVKAEGRGESNPVAPNDNKVNRALNRRVEITLLVAPENTQAEINGLPQGTGK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9391 - -


  Protein sequence: 401 a.a.    

>T6CP259568 NZ_PQGJ01000003:c607209-606007 [Serratia marcescens] [TssL]
MAPAANPLVDAANPLLNAISQIRQSATHANPAQLRQQLIDEMRRFEIRGQRANLPYEVIIGARYCLCTALDEAAALTPWG
SNSVWSGSGLLVTFHNETWGGEKFFQLLAKLSQSPREHINLLELINYCLLLGFEGRYRVMENGRSQLETMKQRLLQLIRT
VRGGYAPPLSPHALDLPVQQKLWRPLVPLWACVALTGFLASLLFIALNWRLGDNTSPVLAAIYQTNLPQVAIGNPAPAAP
PTLSLKSFLRKEIAEGLVVVRDEAQQSVVILKGDGLFDSAATTVRANYIPVIDRIAAAMNGVSGKILVTGYSDNLPIRSA
RFASNWELSLARAEAVSARLQKHLANPQRVKAEGRGESNPVAPNDNKVNRALNRRVEITLLVAPENTQAEINGLPQGTGK
*

  Nucleotide sequence: 1203 bp    

>T6CP259568 NZ_PQGJ01000003:c607209-606007 [Serratia marcescens] [TssL]
ATGGCGCCAGCGGCCAATCCGCTGGTGGACGCCGCCAACCCGCTGCTGAACGCCATTTCGCAGATCCGCCAGTCGGCCAC
GCACGCCAACCCAGCGCAGCTGCGCCAACAGCTGATCGACGAAATGCGCCGCTTCGAGATCCGCGGCCAACGTGCCAATC
TGCCGTACGAAGTGATCATCGGCGCGCGTTATTGCCTGTGCACCGCGCTGGATGAAGCGGCGGCGCTGACCCCGTGGGGC
AGCAACAGCGTGTGGTCCGGCAGCGGGCTGCTGGTGACCTTCCATAACGAAACCTGGGGCGGCGAAAAGTTTTTCCAGCT
GCTGGCCAAGCTGTCGCAGAGCCCGCGTGAGCACATCAACCTGCTGGAACTGATCAATTATTGCCTGCTGCTGGGCTTTG
AAGGCCGCTATCGGGTCATGGAAAACGGCCGTTCTCAGCTGGAAACCATGAAGCAGCGCCTGCTGCAGCTGATCCGGACG
GTGCGCGGCGGCTATGCCCCGCCGCTGTCGCCTCATGCGCTGGATCTGCCGGTACAGCAGAAACTGTGGCGGCCGCTGGT
GCCGCTGTGGGCCTGCGTGGCGCTGACCGGCTTCCTGGCTTCGCTGCTGTTCATCGCCCTCAACTGGCGGCTGGGCGACA
ACACCAGCCCGGTGCTGGCGGCGATTTACCAAACCAATCTGCCGCAGGTGGCGATCGGTAACCCGGCGCCGGCCGCGCCG
CCGACGCTGAGCCTGAAAAGCTTCCTGCGCAAAGAGATCGCCGAAGGGCTGGTGGTGGTGCGCGACGAAGCGCAGCAAAG
CGTGGTGATCCTGAAAGGCGACGGGCTGTTCGACTCCGCCGCCACCACGGTGCGCGCCAACTATATCCCGGTCATCGACC
GCATCGCCGCCGCCATGAACGGTGTCAGCGGCAAGATCCTGGTCACCGGCTACAGCGACAACCTGCCGATCCGCAGCGCC
CGTTTCGCCTCCAACTGGGAGCTGTCGCTGGCGCGCGCCGAAGCGGTCAGCGCCCGCTTGCAAAAACACCTCGCCAACCC
GCAACGGGTCAAGGCCGAGGGCCGCGGCGAGAGCAACCCCGTCGCGCCGAACGATAACAAAGTGAACCGCGCGTTGAACC
GCCGGGTAGAAATTACGCTGTTGGTCGCCCCGGAAAACACCCAGGCGGAAATCAACGGCTTGCCGCAAGGAACCGGAAAG
TAA