Detailed information of component protein


Summary

Component ID T6CP259567
Component protein type TssM
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (1212 a.a.); Nucleotide sequence (3636 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13985
Coordinate (Strand) 602372..606007 (-)
NCBI ID WP_103687230.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDAF677
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 8.5e-96 210..484
IcmF-related PF06761.14 8.1e-85 536..840
IcmF_C PF06744.14 3.8e-22 1095..1197
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MLSTLFSIITSR
Transmembrane helix 13-35 LLWGFVGITALAFIIWMIGPLVA
Outside 36-49 IGDYRPLEPELNRQ
Transmembrane helix 50-72 IAIGVIYLIWFLCRLIPRLYSAW
Inside 73-475 FNSRLLSNLRAAETVPAEDGKPEVKQDDQLAQRFDEAAQLLKKARFAPGQGDGKHRWMTRFSRQYLYQLPWYVIIGAPGAGKTTALVNSGLHFPLADRFGKSALRGVGGTRNCDWWFTNDAVLLDTAGRYTTQESQREEDAGEWQSFVALLKKYRTRQPINGVMVTISVADLLSDSAEARAAQASALRKRLIELHEQLGIHFPVYVLVTKTDLLNGFMAYFGSFDKAQRDQIWGFTFPYERSRQPDFNLNAAFEQQYALLQQRLDAALPDTLLMEHDARQRAESYLFPQEFAALRPLLGHYLEQVFATSSFETRFTPRGIYFTSGTQEGLPFDRVMGELNRYLQLPTANSGAQANAAWDSVGQETPIPAAKGQSFFLKETLESVIFQESGLAGSNRWWEYRNR
Transmembrane helix 476-498 ALHWAGYIALAVILAVLAMLWFT
Outside 499-1211 SYGNNKAYLAEVAAKVPGVERQGQNLTQVGNGDMFSLLPFLNSLLHLPDSQNFSLDDPPFTYRMGLFRGDQVGDAGNALYQKALKELLLPQVAQQIATTLRNDNHGDADFSYEALKAYQMLYLPKQYDGKFLRAWVMLNLQRNLPQGSTQKQLQQIEWHLSQLLDAQIQASPYAKDEQLVAQAQAAINRAPLSQRVYGRVKRLLLKQTDIKPVSLVDLAGPQTELAFSRKSGKPVTDGVPGLFTSQGYWKAFNDNIDPVTDTLRKEDVWVLNSQTPEQKSADLTKTIRQLYMQDFISAWDELLGDIQLANIGNLTQRISSARLLSGTPSPMRNLLVNVSKNVTLRDEKSDADSRSLLAKTEDRLNQNANRTLEALFTNRPANADGDVSAQPEQLVMAHFAPLLELAQSQGEGNKAIPFDSVLKQVDELYSYLTAVQGAANSGMSAPPSDIIPRLQAESGRLPVPFKQMLLSLAIGASSDTQRKEMENVKKRISFEVGSFCRQAIAGRYPLVARARQEVTPDDLARMFAPNSGLMDSFFRDNLQGKVDTTRANWRFTPGVDGKTLPGGEGILRSFQQAQRIRDAFFANGTATPSYRVTVRPVRMDNDILNLTLDIDGQLFKYSHGPQVPLVVSWPGTRNTNQVHLQLALANGTTASLVTSGPWALNRLVDMAQSSGTGGLGRQATFNLDGHRVTLEFTPNSIRNPFQLPAFSCP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9970 - -


  Protein sequence: 1212 a.a.    

>T6CP259567 NZ_PQGJ01000003:c606007-602372 [Serratia marcescens] [TssM]
MLSTLFSIITSRLLWGFVGITALAFIIWMIGPLVAIGDYRPLEPELNRQIAIGVIYLIWFLCRLIPRLYSAWFNSRLLSN
LRAAETVPAEDGKPEVKQDDQLAQRFDEAAQLLKKARFAPGQGDGKHRWMTRFSRQYLYQLPWYVIIGAPGAGKTTALVN
SGLHFPLADRFGKSALRGVGGTRNCDWWFTNDAVLLDTAGRYTTQESQREEDAGEWQSFVALLKKYRTRQPINGVMVTIS
VADLLSDSAEARAAQASALRKRLIELHEQLGIHFPVYVLVTKTDLLNGFMAYFGSFDKAQRDQIWGFTFPYERSRQPDFN
LNAAFEQQYALLQQRLDAALPDTLLMEHDARQRAESYLFPQEFAALRPLLGHYLEQVFATSSFETRFTPRGIYFTSGTQE
GLPFDRVMGELNRYLQLPTANSGAQANAAWDSVGQETPIPAAKGQSFFLKETLESVIFQESGLAGSNRWWEYRNRALHWA
GYIALAVILAVLAMLWFTSYGNNKAYLAEVAAKVPGVERQGQNLTQVGNGDMFSLLPFLNSLLHLPDSQNFSLDDPPFTY
RMGLFRGDQVGDAGNALYQKALKELLLPQVAQQIATTLRNDNHGDADFSYEALKAYQMLYLPKQYDGKFLRAWVMLNLQR
NLPQGSTQKQLQQIEWHLSQLLDAQIQASPYAKDEQLVAQAQAAINRAPLSQRVYGRVKRLLLKQTDIKPVSLVDLAGPQ
TELAFSRKSGKPVTDGVPGLFTSQGYWKAFNDNIDPVTDTLRKEDVWVLNSQTPEQKSADLTKTIRQLYMQDFISAWDEL
LGDIQLANIGNLTQRISSARLLSGTPSPMRNLLVNVSKNVTLRDEKSDADSRSLLAKTEDRLNQNANRTLEALFTNRPAN
ADGDVSAQPEQLVMAHFAPLLELAQSQGEGNKAIPFDSVLKQVDELYSYLTAVQGAANSGMSAPPSDIIPRLQAESGRLP
VPFKQMLLSLAIGASSDTQRKEMENVKKRISFEVGSFCRQAIAGRYPLVARARQEVTPDDLARMFAPNSGLMDSFFRDNL
QGKVDTTRANWRFTPGVDGKTLPGGEGILRSFQQAQRIRDAFFANGTATPSYRVTVRPVRMDNDILNLTLDIDGQLFKYS
HGPQVPLVVSWPGTRNTNQVHLQLALANGTTASLVTSGPWALNRLVDMAQSSGTGGLGRQATFNLDGHRVTLEFTPNSIR
NPFQLPAFSCP*

  Nucleotide sequence: 3636 bp    

>T6CP259567 NZ_PQGJ01000003:c606007-602372 [Serratia marcescens] [TssM]
ATGCTCAGTACGTTATTCTCCATCATCACCAGCCGCCTGCTGTGGGGCTTTGTCGGCATTACCGCGCTGGCGTTCATCAT
CTGGATGATCGGCCCGCTGGTGGCCATCGGCGACTATCGCCCGCTGGAGCCGGAACTTAACCGCCAGATCGCCATTGGCG
TCATCTACCTGATCTGGTTCCTGTGCCGCCTGATCCCGCGCCTCTACAGCGCCTGGTTCAACAGCCGCCTGCTGAGCAAC
CTGCGCGCCGCCGAAACGGTGCCGGCGGAAGACGGCAAGCCAGAGGTTAAACAAGACGATCAGCTGGCGCAGCGCTTCGA
CGAAGCGGCGCAGCTGCTGAAAAAGGCGCGCTTCGCACCGGGCCAGGGCGACGGCAAACACCGCTGGATGACCCGCTTTA
GCCGCCAATACCTGTACCAACTGCCGTGGTATGTGATCATCGGCGCGCCCGGCGCCGGCAAGACCACCGCGCTGGTCAAT
TCCGGCCTGCACTTCCCGCTGGCGGATCGCTTCGGCAAATCCGCGCTGCGCGGCGTGGGCGGCACCCGCAACTGCGACTG
GTGGTTTACCAACGACGCCGTGTTGCTCGACACCGCCGGCCGCTACACCACCCAGGAAAGCCAGCGCGAAGAAGACGCCG
GCGAATGGCAAAGCTTCGTCGCGCTGCTGAAAAAATATCGCACCCGCCAGCCAATCAACGGCGTGATGGTCACCATCAGC
GTCGCCGATCTGCTGAGCGACAGCGCCGAAGCGCGCGCCGCCCAGGCCAGCGCGCTGCGCAAACGCCTGATCGAACTGCA
CGAACAGCTGGGCATTCACTTCCCGGTCTATGTGCTGGTGACCAAAACCGACCTGCTCAACGGCTTTATGGCCTATTTCG
GCAGCTTCGACAAAGCGCAGCGCGACCAGATCTGGGGATTCACCTTCCCTTACGAACGCTCGCGGCAGCCGGACTTCAAC
CTGAACGCCGCCTTCGAACAGCAATACGCCCTGCTGCAACAACGGTTGGATGCGGCGCTGCCGGATACGCTGCTGATGGA
GCACGACGCGCGCCAACGCGCCGAAAGCTATCTGTTCCCGCAGGAATTCGCCGCGCTGCGCCCGCTGCTCGGCCACTATC
TGGAACAGGTGTTCGCCACCTCCAGTTTTGAAACCCGCTTTACCCCGCGCGGCATCTATTTCACCAGCGGCACCCAAGAG
GGGCTGCCGTTCGACCGGGTGATGGGCGAACTGAACCGCTACCTGCAGCTGCCGACGGCCAACTCAGGGGCGCAGGCCAA
CGCGGCCTGGGACAGCGTGGGCCAGGAAACGCCGATCCCGGCGGCCAAGGGCCAGAGCTTCTTCCTGAAAGAGACGCTGG
AATCGGTGATCTTCCAGGAGTCCGGGCTGGCGGGCAGCAACCGCTGGTGGGAATACCGCAACCGCGCCCTGCACTGGGCG
GGTTACATCGCGCTGGCGGTGATCCTGGCGGTGCTGGCGATGCTCTGGTTCACCAGCTACGGCAACAACAAGGCCTACCT
GGCGGAAGTGGCCGCCAAGGTGCCCGGCGTCGAGCGCCAGGGGCAAAACCTGACGCAGGTGGGCAACGGCGACATGTTCT
CGCTGCTGCCGTTCCTCAACAGCCTGCTGCACCTGCCGGACAGCCAGAACTTTTCGCTGGACGATCCGCCGTTCACTTAC
CGCATGGGGCTGTTCCGCGGCGATCAGGTCGGTGACGCCGGCAATGCCCTGTACCAAAAAGCGCTGAAAGAGCTGCTGCT
GCCGCAGGTGGCGCAACAGATCGCCACCACGCTGCGCAACGACAACCACGGCGACGCGGACTTCAGCTATGAAGCTTTGA
AGGCCTACCAGATGCTGTACCTGCCGAAGCAGTACGACGGCAAATTCCTGCGCGCCTGGGTGATGCTCAACCTGCAGCGC
AACCTGCCGCAGGGCAGCACCCAAAAACAGCTGCAACAGATCGAATGGCACCTGAGCCAACTGCTGGATGCGCAGATCCA
GGCCTCGCCCTACGCCAAAGATGAACAGCTGGTGGCGCAGGCGCAGGCCGCCATCAATCGGGCGCCGCTGTCGCAGCGCG
TCTATGGCCGCGTCAAGCGCTTGCTGCTGAAACAGACCGACATCAAGCCGGTCAGCCTGGTCGATTTGGCCGGCCCGCAG
ACCGAGCTGGCGTTCAGCCGCAAAAGCGGCAAACCGGTCACCGACGGCGTGCCGGGCCTGTTCACCTCGCAAGGGTACTG
GAAAGCGTTCAACGACAACATCGATCCGGTGACCGATACCCTGCGCAAGGAAGACGTCTGGGTGTTGAACAGCCAGACGC
CGGAGCAGAAGAGCGCCGATTTGACCAAGACCATCCGCCAGCTGTACATGCAGGATTTCATCAGCGCCTGGGATGAGCTG
CTGGGGGATATCCAACTGGCCAACATCGGCAACCTGACCCAGCGCATCAGCAGCGCGCGCCTGCTGTCAGGCACCCCGTC
GCCGATGCGCAACCTGCTGGTCAACGTCAGCAAAAACGTCACCCTGCGCGACGAGAAAAGCGACGCCGATTCCCGCTCGC
TGCTGGCCAAAACCGAAGACAGGCTGAATCAAAACGCCAACCGCACGCTGGAGGCGCTGTTCACCAACCGGCCGGCCAAC
GCCGACGGCGACGTGTCGGCCCAGCCGGAACAGCTGGTGATGGCGCACTTCGCGCCGCTGCTGGAGCTGGCGCAAAGCCA
GGGCGAAGGCAATAAGGCGATCCCTTTCGACAGCGTGCTGAAACAGGTCGATGAGCTGTACAGCTACCTGACGGCGGTGC
AAGGCGCGGCCAACAGCGGCATGTCGGCGCCGCCGAGCGACATCATCCCGCGCCTGCAGGCCGAGTCCGGCCGCTTGCCG
GTGCCGTTCAAACAGATGCTGCTGTCACTGGCGATCGGCGCCAGCAGCGACACCCAGCGCAAAGAGATGGAGAACGTGAA
AAAGCGCATCAGCTTCGAGGTCGGCAGCTTCTGCCGCCAGGCGATCGCCGGGCGTTATCCGCTGGTGGCCCGGGCGCGCC
AGGAAGTGACGCCGGACGATTTGGCGCGCATGTTCGCGCCGAACAGCGGGCTGATGGACAGCTTCTTCCGCGACAACCTG
CAGGGCAAGGTCGACACTACCCGCGCCAACTGGCGCTTTACCCCCGGCGTGGACGGCAAGACGCTGCCCGGCGGCGAAGG
CATCCTGCGTTCGTTCCAGCAGGCGCAGCGCATCCGCGACGCCTTCTTCGCCAACGGTACCGCGACGCCCTCGTACCGCG
TGACCGTGCGGCCGGTGCGGATGGATAACGACATCCTCAACCTGACGCTGGATATCGACGGGCAGCTGTTCAAATACAGC
CACGGCCCGCAGGTGCCGCTGGTGGTCAGCTGGCCGGGCACCCGCAATACCAACCAGGTGCATCTGCAGCTGGCGCTGGC
CAACGGCACCACCGCCAGCCTGGTGACCAGCGGGCCGTGGGCGCTGAACCGCCTGGTAGATATGGCGCAGTCTTCGGGCA
CCGGCGGCCTCGGCCGTCAGGCGACGTTCAATCTCGACGGCCACCGCGTCACGCTGGAGTTCACGCCCAACAGCATTCGC
AATCCGTTCCAACTGCCGGCCTTCTCGTGCCCGTAG