Detailed information of component protein
Summary
| Component ID | T6CP259566 |
| Component protein type | TagF |
| T6SS ID (Type) | T6SS17505  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (240 a.a.); Nucleotide sequence (720 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS13980 |
| Coordinate (Strand) | 601634..602353 (-) |
| NCBI ID | WP_004934950.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | A0A0P0QK23_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TagF_N | PF09867.11 | 3.4e-41 | 12..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-239 | MSTDSSAPTSIGWYGKLPSAGDFLQRRLPDPVINNWAHWFHNGLVNLQRDAQGPNDHPFSNAPVWNFVIPATLGSQYVQMGCLLPARDRVGRRYPICALRLFSQQDWRPQQLNMAASWYQQLGHTLLNGVRNGFSAEQIDRTLQAIPALPSPPAEADSEILSIIGFQHPDVPGLGWQQAADCFDPAQYTSFWWTNQADGHPLYTHVHSGNLTVQLFSLLFEPNGWARPGRGGQYPQMFD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9828 | - | - |
Protein sequence: 240 a.a.
>T6CP259566 NZ_PQGJ01000003:c602353-601634 [Serratia marcescens] [TagF]
MSTDSSAPTSIGWYGKLPSAGDFLQRRLPDPVINNWAHWFHNGLVNLQRDAQGPNDHPFSNAPVWNFVIPATLGSQYVQM
GCLLPARDRVGRRYPICALRLFSQQDWRPQQLNMAASWYQQLGHTLLNGVRNGFSAEQIDRTLQAIPALPSPPAEADSEI
LSIIGFQHPDVPGLGWQQAADCFDPAQYTSFWWTNQADGHPLYTHVHSGNLTVQLFSLLFEPNGWARPGRGGQYPQMFD*
MSTDSSAPTSIGWYGKLPSAGDFLQRRLPDPVINNWAHWFHNGLVNLQRDAQGPNDHPFSNAPVWNFVIPATLGSQYVQM
GCLLPARDRVGRRYPICALRLFSQQDWRPQQLNMAASWYQQLGHTLLNGVRNGFSAEQIDRTLQAIPALPSPPAEADSEI
LSIIGFQHPDVPGLGWQQAADCFDPAQYTSFWWTNQADGHPLYTHVHSGNLTVQLFSLLFEPNGWARPGRGGQYPQMFD*
Nucleotide sequence: 720 bp
>T6CP259566 NZ_PQGJ01000003:c602353-601634 [Serratia marcescens] [TagF]
ATGAGCACTGATTCAAGCGCCCCGACGAGCATCGGCTGGTACGGCAAACTTCCTTCCGCCGGTGACTTCCTGCAACGCCG
TTTGCCTGACCCGGTGATCAACAACTGGGCCCACTGGTTCCATAACGGGCTGGTGAATTTGCAGCGCGATGCGCAGGGGC
CAAACGATCACCCGTTCAGCAACGCGCCGGTGTGGAACTTCGTGATCCCCGCCACGCTCGGCAGCCAGTACGTGCAGATG
GGCTGCCTGTTGCCGGCGCGCGACCGCGTCGGGCGGCGTTACCCCATCTGCGCGCTGCGCCTGTTCAGCCAACAGGATTG
GCGCCCGCAACAGCTGAACATGGCGGCGAGCTGGTACCAACAGCTCGGCCATACCCTGCTGAACGGTGTGCGCAACGGCT
TCTCCGCCGAACAGATCGACCGCACGCTGCAGGCGATCCCGGCGCTGCCCAGCCCGCCGGCGGAAGCGGACTCCGAGATA
TTGTCGATTATCGGGTTCCAGCATCCGGACGTACCGGGCCTCGGCTGGCAACAGGCCGCCGACTGTTTCGATCCGGCGCA
GTACACCAGCTTCTGGTGGACCAACCAGGCCGACGGACACCCGCTCTACACCCACGTGCACAGCGGCAACCTCACCGTGC
AGCTGTTTTCACTGCTGTTCGAGCCCAACGGCTGGGCGCGCCCCGGCCGCGGCGGCCAGTACCCGCAAATGTTTGATTAA
ATGAGCACTGATTCAAGCGCCCCGACGAGCATCGGCTGGTACGGCAAACTTCCTTCCGCCGGTGACTTCCTGCAACGCCG
TTTGCCTGACCCGGTGATCAACAACTGGGCCCACTGGTTCCATAACGGGCTGGTGAATTTGCAGCGCGATGCGCAGGGGC
CAAACGATCACCCGTTCAGCAACGCGCCGGTGTGGAACTTCGTGATCCCCGCCACGCTCGGCAGCCAGTACGTGCAGATG
GGCTGCCTGTTGCCGGCGCGCGACCGCGTCGGGCGGCGTTACCCCATCTGCGCGCTGCGCCTGTTCAGCCAACAGGATTG
GCGCCCGCAACAGCTGAACATGGCGGCGAGCTGGTACCAACAGCTCGGCCATACCCTGCTGAACGGTGTGCGCAACGGCT
TCTCCGCCGAACAGATCGACCGCACGCTGCAGGCGATCCCGGCGCTGCCCAGCCCGCCGGCGGAAGCGGACTCCGAGATA
TTGTCGATTATCGGGTTCCAGCATCCGGACGTACCGGGCCTCGGCTGGCAACAGGCCGCCGACTGTTTCGATCCGGCGCA
GTACACCAGCTTCTGGTGGACCAACCAGGCCGACGGACACCCGCTCTACACCCACGTGCACAGCGGCAACCTCACCGTGC
AGCTGTTTTCACTGCTGTTCGAGCCCAACGGCTGGGCGCGCCCCGGCCGCGGCGGCCAGTACCCGCAAATGTTTGATTAA