Detailed information of component protein


Summary

Component ID T6CP259565
Component protein type TssA
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (344 a.a.); Nucleotide sequence (1032 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13975
Coordinate (Strand) 600579..601610 (-)
NCBI ID WP_103687229.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDA6831
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.1e-35 9..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-343 MAIDTDTLLAPVDADTPCGDNLEYDADFLAMVRAATGKAEQQFGSTIIPEEAPDWVQVERLASSLLARTKDLRVMLYLTRAWTQLRGLPGYADGLTLIHQAILRYWDALQPPLEFDGEADPLFRINALADLGDKAALAASVRAAPLLKSAAGEISLRDAGALLDGSKQECPNFPGGRARLQDELAQQDRPEGALVMHIANTLAAIRSEVTRHLGESALPEMSALTKVFSLVALAGQSEAPAATEADATQETAAEQPPAAVQSASAPLNWRSAQIQSRDDAQLMLDKVKNYFRLHEPSHPAPLMIDRVQRLIALDFMQIVRDLAPDGLNQLETILGRPDHEENS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9904 - -


  Protein sequence: 344 a.a.    

>T6CP259565 NZ_PQGJ01000003:c601610-600579 [Serratia marcescens] [TssA]
MAIDTDTLLAPVDADTPCGDNLEYDADFLAMVRAATGKAEQQFGSTIIPEEAPDWVQVERLASSLLARTKDLRVMLYLTR
AWTQLRGLPGYADGLTLIHQAILRYWDALQPPLEFDGEADPLFRINALADLGDKAALAASVRAAPLLKSAAGEISLRDAG
ALLDGSKQECPNFPGGRARLQDELAQQDRPEGALVMHIANTLAAIRSEVTRHLGESALPEMSALTKVFSLVALAGQSEAP
AATEADATQETAAEQPPAAVQSASAPLNWRSAQIQSRDDAQLMLDKVKNYFRLHEPSHPAPLMIDRVQRLIALDFMQIVR
DLAPDGLNQLETILGRPDHEENS*

  Nucleotide sequence: 1032 bp    

>T6CP259565 NZ_PQGJ01000003:c601610-600579 [Serratia marcescens] [TssA]
ATGGCTATCGACACCGATACCCTGCTGGCCCCGGTTGACGCGGACACACCCTGCGGCGACAACCTGGAATACGACGCCGA
CTTTCTGGCCATGGTGCGCGCCGCCACCGGCAAGGCCGAACAACAGTTCGGCAGCACCATCATTCCGGAAGAGGCGCCGG
ACTGGGTGCAGGTCGAGCGCCTCGCAAGCTCGCTGCTGGCGCGCACCAAAGACCTGCGCGTCATGCTGTATCTCACCCGC
GCCTGGACCCAGCTGCGCGGATTGCCGGGCTATGCCGACGGGCTGACGCTGATCCACCAGGCGATACTCCGCTACTGGGA
TGCTCTGCAGCCGCCGCTGGAGTTCGACGGCGAGGCCGACCCGCTGTTTCGCATCAACGCGCTGGCCGACCTTGGCGACA
AGGCCGCGCTGGCCGCCAGCGTGCGCGCCGCGCCGCTGCTGAAAAGCGCCGCCGGTGAAATCTCGCTGCGCGATGCGGGC
GCCCTGCTCGACGGCAGCAAGCAAGAGTGCCCCAACTTTCCCGGCGGCCGTGCGCGGCTGCAGGATGAACTGGCGCAGCA
GGATCGCCCCGAAGGCGCGCTGGTAATGCACATCGCCAACACCCTGGCCGCCATCCGCAGCGAAGTCACCCGCCATCTGG
GTGAAAGCGCACTGCCGGAAATGAGCGCGCTGACCAAGGTCTTTTCGCTGGTGGCGCTCGCCGGCCAGAGCGAGGCCCCG
GCCGCCACCGAGGCGGACGCCACACAGGAAACCGCCGCTGAGCAACCACCGGCCGCCGTGCAGAGCGCCTCTGCCCCACT
CAACTGGCGCAGCGCGCAGATCCAGTCGCGCGACGACGCCCAGCTGATGCTGGACAAGGTGAAAAACTATTTTCGTCTTC
ATGAGCCAAGCCACCCGGCGCCGCTGATGATCGATCGGGTCCAGCGGCTGATTGCGCTGGACTTTATGCAAATCGTCCGC
GATTTGGCGCCCGATGGGCTTAACCAACTGGAGACCATTCTCGGTCGCCCCGACCACGAGGAGAACAGCTAG