Detailed information of component protein


Summary

Component ID T6CP259564
Component protein type TssB
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (179 a.a.); Nucleotide sequence (537 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) C3R39_RS13970
Coordinate (Strand) 599920..600456 (-)
NCBI ID WP_015378282.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A086GD87_9GAMM, A0A7C8GGY4_9ENTR, A0A0M4IMW1_SERMA
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2.5e-57 14..163

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-178 MSNSKSRSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKAVDPQASVEERKFMEIDVDNFDERMKSLKPRVAYQVDNTLTGEGKLNIDLTFESMEDFSPAAIARKVDALDNLLDARTQLSNLLSYMDGKNGAEELISKILQNPALLKSLTDAPKPAVNDDNNERED



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9917 - -



  Protein sequence: 179 a.a.    

>T6CP259564 NZ_PQGJ01000003:c600456-599920 [Serratia marcescens] [TssB]
MSNSKSRSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKAVDPQASVEERKFMEIDVDNFDERMKSLK
PRVAYQVDNTLTGEGKLNIDLTFESMEDFSPAAIARKVDALDNLLDARTQLSNLLSYMDGKNGAEELISKILQNPALLKS
LTDAPKPAVNDDNNERED*

  Nucleotide sequence: 537 bp    

>T6CP259564 NZ_PQGJ01000003:c600456-599920 [Serratia marcescens] [TssB]
ATGTCAAACTCGAAATCCCGCAGCGGGCAGAAATTCATCGCCCGCAACCGCGCGCCGCGCGTACAGATTGAATACGATGT
CGAAATTTATGGCGCAGAGCGCAAAATCCAGCTGCCGTTCGTGATGGGCGTGATGGCGGATCTGGTGGGGAAAGCGGTCG
ATCCGCAAGCCAGCGTGGAAGAGCGCAAGTTCATGGAAATCGACGTCGACAACTTCGACGAGCGCATGAAATCGCTGAAG
CCGCGCGTCGCTTACCAGGTTGACAATACCCTGACCGGCGAAGGCAAGCTGAACATCGATCTGACCTTCGAAAGCATGGA
AGACTTCTCCCCCGCCGCTATCGCCCGCAAGGTCGACGCGCTGGACAATCTGCTGGACGCCCGCACCCAGCTTTCCAACC
TGCTGTCCTACATGGACGGTAAAAACGGCGCCGAGGAGCTGATCTCCAAGATCCTGCAAAACCCGGCGCTGCTGAAATCC
CTGACCGACGCGCCGAAGCCGGCGGTTAACGATGACAACAACGAGCGTGAGGATTAA