Detailed information of component protein


Summary

Component ID T6CP259563
Component protein type TssC
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (502 a.a.); Nucleotide sequence (1506 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13965
Coordinate (Strand) 598411..599916 (-)
NCBI ID WP_004934958.1
RefSeq NZ_PQGJ01000003
Uniprot ID A0A7C8GIA2_9ENTR, A0A0G8BEN0_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.8e-137 69..371
VipB_2 PF18945.2 3.8e-45 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-501 MSNSPQQQNALQTTETFSSDEFSALLNKEFRPKTDQAKEAVENAVKTLAQQALENTVTVSSDAYRTIQALIAEIDEKLSQQINQIIHHDDFQKLEGAWHGLHYLVNNSETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKIYEEEYGQFGGEPFGCLVGDYYFDHSPQDVELLGEMAKIGAASHCPFIAGTAPSVMQMESWQELSNPRDLTKIFQNTEYAAWRSLRESEDARYLGLVMPRFLARLPYGIRTNPVDEFDFEEDTDGATHGNYTWTNAAYAMAANINRSFKEFGWCTAIRGVESGGAVENLPCHTFPSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYYDADASANAQLSARLPYLFACCRFAHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKSRKPLAAAEVQVEEIEDNPGYYSAKFFLRPHYQLEGLTVSLRLVSKLPSLKQNDAS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9833 - -


  Protein sequence: 502 a.a.    

>T6CP259563 NZ_PQGJ01000003:c599916-598411 [Serratia marcescens] [TssC]
MSNSPQQQNALQTTETFSSDEFSALLNKEFRPKTDQAKEAVENAVKTLAQQALENTVTVSSDAYRTIQALIAEIDEKLSQ
QINQIIHHDDFQKLEGAWHGLHYLVNNSETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKIYEEEYGQFGGEPF
GCLVGDYYFDHSPQDVELLGEMAKIGAASHCPFIAGTAPSVMQMESWQELSNPRDLTKIFQNTEYAAWRSLRESEDARYL
GLVMPRFLARLPYGIRTNPVDEFDFEEDTDGATHGNYTWTNAAYAMAANINRSFKEFGWCTAIRGVESGGAVENLPCHTF
PSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYYDADASANAQLSARLPYLFACCRF
AHYLKCIVRDKIGSFRERDDMERWLNDWIMNYVDGDPANSSQETKSRKPLAAAEVQVEEIEDNPGYYSAKFFLRPHYQLE
GLTVSLRLVSKLPSLKQNDAS*

  Nucleotide sequence: 1506 bp    

>T6CP259563 NZ_PQGJ01000003:c599916-598411 [Serratia marcescens] [TssC]
ATGAGCAACTCGCCTCAGCAACAAAATGCGTTGCAAACCACCGAGACTTTTTCCAGCGATGAGTTCAGCGCGCTGTTGAA
CAAAGAGTTCCGGCCGAAGACCGATCAGGCCAAAGAAGCGGTCGAGAACGCGGTGAAAACGCTGGCGCAGCAGGCGCTGG
AAAATACCGTCACCGTTTCTTCCGACGCCTACCGCACCATCCAGGCGCTGATCGCGGAAATCGACGAAAAGCTGTCGCAG
CAGATCAACCAGATCATTCACCACGACGATTTCCAGAAGCTGGAAGGCGCGTGGCACGGCCTGCACTACCTGGTCAACAA
CTCTGAAACCGACGAGATGCTGAAGATCCGCTTCATGAGCATTTCCAAGCAGGAGCTGGGCCGCACGCTGAAGCGTTATA
AAGGCGTGGGCTGGGATCAGAGCCCGATCTTCAAGAAAATCTACGAAGAAGAATATGGCCAGTTCGGCGGCGAGCCGTTC
GGCTGCCTGGTGGGCGACTACTACTTCGATCACAGCCCGCAGGACGTGGAGCTGCTGGGCGAAATGGCCAAGATCGGCGC
CGCCTCGCACTGCCCGTTCATCGCCGGCACCGCACCGAGCGTGATGCAGATGGAGTCCTGGCAGGAGCTCTCCAACCCAC
GCGATCTGACCAAGATTTTCCAGAACACCGAATACGCCGCCTGGCGCAGCCTGCGCGAATCGGAAGACGCGCGCTACCTG
GGCCTGGTGATGCCGCGCTTCCTGGCGCGCCTGCCGTATGGCATCCGCACCAACCCGGTGGACGAGTTTGACTTCGAAGA
AGATACCGACGGCGCGACCCACGGCAACTACACCTGGACCAACGCCGCCTACGCCATGGCCGCCAACATCAACCGTTCGT
TCAAAGAGTTCGGCTGGTGCACCGCCATTCGCGGGGTGGAATCCGGCGGCGCGGTGGAAAACCTGCCGTGCCACACCTTC
CCGAGCGACGACGGCGGCGTGGACATGAAATGCCCGACCGAGATCGCCATCAGCGACCGCCGCGAAGCCGAGCTGGCCAA
AAACGGCTTTATGCCGCTGGTGCACCGCAAAAACTCCGACTTCGCCGCCTTTATCGGCGCGCAGTCGCTGCAGAAGCCGG
CGGAATACTACGACGCCGACGCCTCAGCCAACGCCCAGCTTTCCGCGCGCCTGCCATACCTGTTCGCCTGCTGCCGCTTC
GCGCACTATCTGAAGTGCATCGTGCGCGACAAAATTGGCTCCTTCCGCGAGCGCGACGACATGGAGCGCTGGCTGAACGA
CTGGATCATGAACTACGTGGACGGCGATCCGGCCAACTCCTCGCAGGAAACCAAGTCGCGCAAACCGCTGGCCGCGGCGG
AAGTGCAGGTGGAAGAGATTGAAGACAACCCGGGCTACTACAGCGCCAAGTTCTTCCTGCGCCCGCACTACCAGCTGGAA
GGCCTGACCGTTTCTCTGCGCCTGGTGTCGAAGCTGCCTTCGCTGAAACAAAACGACGCGTCCTGA