Detailed information of component protein
Summary
| Component ID | T6CP259562 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS17505  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS13960 |
| Coordinate (Strand) | 597624..598106 (-) |
| NCBI ID | WP_004934962.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | A0A7C8CBF9_9ENTR, A0A0G8BFW1_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 5.2e-37 | 6..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MAIDMFLKVEGASGESKDSNHKGWTDITSFSWGASQPGNMGVGGGGGAGKVCFNDLHVNALIDKSTPALLKHCSSGKHLTKIELSVCKAGGTQVEYAKITLEDVLVTAVQYTGAGGEDTVGVTYSFQAAKVKQQYWEQSDKGGKGAESSAGWNIKENREA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9147 | - | - |
Protein sequence: 161 a.a.
>T6CP259562 NZ_PQGJ01000003:c598106-597624 [Serratia marcescens] [TssD]
MAIDMFLKVEGASGESKDSNHKGWTDITSFSWGASQPGNMGVGGGGGAGKVCFNDLHVNALIDKSTPALLKHCSSGKHLT
KIELSVCKAGGTQVEYAKITLEDVLVTAVQYTGAGGEDTVGVTYSFQAAKVKQQYWEQSDKGGKGAESSAGWNIKENREA
*
MAIDMFLKVEGASGESKDSNHKGWTDITSFSWGASQPGNMGVGGGGGAGKVCFNDLHVNALIDKSTPALLKHCSSGKHLT
KIELSVCKAGGTQVEYAKITLEDVLVTAVQYTGAGGEDTVGVTYSFQAAKVKQQYWEQSDKGGKGAESSAGWNIKENREA
*
Nucleotide sequence: 483 bp
>T6CP259562 NZ_PQGJ01000003:c598106-597624 [Serratia marcescens] [TssD]
ATGGCTATTGATATGTTCCTGAAAGTTGAAGGTGCCAGCGGCGAATCCAAAGATTCGAATCACAAAGGCTGGACCGACAT
TACTTCTTTCTCCTGGGGCGCCTCTCAACCAGGCAATATGGGCGTTGGCGGCGGCGGTGGCGCCGGTAAAGTGTGCTTCA
ACGATCTGCACGTCAACGCGCTGATCGACAAGTCAACCCCGGCCTTGCTGAAACACTGCTCAAGCGGCAAACACCTGACC
AAGATTGAGCTGTCGGTTTGCAAGGCGGGCGGCACCCAGGTTGAATACGCAAAAATCACCCTGGAAGACGTGCTGGTCAC
CGCCGTGCAGTACACTGGTGCAGGCGGCGAAGACACCGTGGGCGTCACCTACTCCTTCCAGGCGGCGAAAGTGAAACAGC
AGTACTGGGAGCAGAGCGACAAAGGCGGCAAAGGCGCCGAAAGCAGCGCAGGTTGGAACATCAAGGAAAACCGCGAAGCT
TAA
ATGGCTATTGATATGTTCCTGAAAGTTGAAGGTGCCAGCGGCGAATCCAAAGATTCGAATCACAAAGGCTGGACCGACAT
TACTTCTTTCTCCTGGGGCGCCTCTCAACCAGGCAATATGGGCGTTGGCGGCGGCGGTGGCGCCGGTAAAGTGTGCTTCA
ACGATCTGCACGTCAACGCGCTGATCGACAAGTCAACCCCGGCCTTGCTGAAACACTGCTCAAGCGGCAAACACCTGACC
AAGATTGAGCTGTCGGTTTGCAAGGCGGGCGGCACCCAGGTTGAATACGCAAAAATCACCCTGGAAGACGTGCTGGTCAC
CGCCGTGCAGTACACTGGTGCAGGCGGCGAAGACACCGTGGGCGTCACCTACTCCTTCCAGGCGGCGAAAGTGAAACAGC
AGTACTGGGAGCAGAGCGACAAAGGCGGCAAAGGCGCCGAAAGCAGCGCAGGTTGGAACATCAAGGAAAACCGCGAAGCT
TAA