Detailed information of component protein


Summary

Component ID T6CP259561
Component protein type TagH
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (576 a.a.); Nucleotide sequence (1728 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13930
Coordinate (Strand) 593391..595118 (-)
NCBI ID WP_103687228.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDA2BC1
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 3.7e-07 27..93
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-575 MRFSIVKNKSGQVPPQSSCDFLPPGGTIGRSVDNNLVLPDEERAISRLQAIVHISADGECRITNRGNVTRVLLNDIPLERGRQVELQDGDVLGIDDYQIEVSALQQHAAPQAQPVAKVAAVAAAAAPVAAAKEPSAAPIPNEIWDSLVEEFTPNAPAAAAPPPVASPDNHPLLDTSTRELNPADPLAQLAGEVDLRQLQQQQTDPAALFNTDTTFEREHILADTTPSALLAEQAAPTRPATPARNAQQPEQELDPLALFGGSSAPASPETLNSNDPLGLLMGGAVPLAQPEEAVLPPSPPPAPAPAAAQPVAPRPQPTPPPVQMPEPQSQPAPQFSPQEPPRPRQGNRLGIDPVAYQSSQRQHAAAPNGDTLEGPLLAALLQGIGLDDLQPQPHFDEQQIRLAGRLLSLFSQGTVALLSSRSILKRGVKAEMTMILDEANNPFKLLPSGKTVLMQMFGSQMPGFMPPEQAVRDALIDLQAHQLGMIAGIRAIIAAMLQSFNPERLEEEARKEGVAPRLSLPANRKAALWDYFVKNYQQTSGEIEDDFHTLFGEAFLHAYDVEVNQYKDSQTKPDA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9486 - -


  Protein sequence: 576 a.a.    

>T6CP259561 NZ_PQGJ01000003:c595118-593391 [Serratia marcescens] [TagH]
MRFSIVKNKSGQVPPQSSCDFLPPGGTIGRSVDNNLVLPDEERAISRLQAIVHISADGECRITNRGNVTRVLLNDIPLER
GRQVELQDGDVLGIDDYQIEVSALQQHAAPQAQPVAKVAAVAAAAAPVAAAKEPSAAPIPNEIWDSLVEEFTPNAPAAAA
PPPVASPDNHPLLDTSTRELNPADPLAQLAGEVDLRQLQQQQTDPAALFNTDTTFEREHILADTTPSALLAEQAAPTRPA
TPARNAQQPEQELDPLALFGGSSAPASPETLNSNDPLGLLMGGAVPLAQPEEAVLPPSPPPAPAPAAAQPVAPRPQPTPP
PVQMPEPQSQPAPQFSPQEPPRPRQGNRLGIDPVAYQSSQRQHAAAPNGDTLEGPLLAALLQGIGLDDLQPQPHFDEQQI
RLAGRLLSLFSQGTVALLSSRSILKRGVKAEMTMILDEANNPFKLLPSGKTVLMQMFGSQMPGFMPPEQAVRDALIDLQA
HQLGMIAGIRAIIAAMLQSFNPERLEEEARKEGVAPRLSLPANRKAALWDYFVKNYQQTSGEIEDDFHTLFGEAFLHAYD
VEVNQYKDSQTKPDA*

  Nucleotide sequence: 1728 bp    

>T6CP259561 NZ_PQGJ01000003:c595118-593391 [Serratia marcescens] [TagH]
ATGCGATTTTCCATTGTAAAAAATAAAAGCGGCCAGGTTCCGCCGCAGAGCAGTTGCGATTTTCTGCCGCCGGGCGGCAC
CATCGGCCGCAGCGTGGACAACAACCTGGTGCTGCCGGACGAAGAGCGCGCCATTTCCCGCCTGCAGGCTATCGTGCATA
TTTCCGCTGACGGCGAATGCCGCATCACCAACCGCGGCAACGTCACCCGCGTGCTGCTGAACGACATTCCGCTGGAGCGC
GGCCGCCAGGTTGAATTGCAGGATGGCGACGTGCTCGGCATCGACGATTACCAGATTGAAGTCAGCGCGCTGCAGCAACA
CGCCGCGCCACAGGCTCAACCGGTGGCCAAGGTCGCCGCCGTTGCTGCGGCGGCAGCCCCTGTTGCCGCTGCCAAAGAAC
CATCCGCCGCGCCCATCCCCAACGAAATCTGGGACAGCCTGGTGGAAGAGTTTACGCCGAACGCGCCGGCGGCCGCCGCA
CCGCCGCCGGTCGCCAGCCCGGATAATCATCCGCTGCTGGATACCTCCACTCGCGAGCTGAACCCGGCCGATCCGCTGGC
GCAGCTGGCGGGCGAGGTCGATCTGCGCCAACTGCAGCAACAGCAAACCGATCCGGCGGCGCTGTTCAATACCGACACCA
CTTTTGAACGCGAACACATTCTGGCCGACACTACCCCCAGCGCGCTGCTGGCGGAGCAGGCTGCGCCGACGCGTCCGGCA
ACACCGGCCCGAAATGCGCAGCAACCGGAGCAAGAGCTGGATCCGCTGGCGCTGTTCGGCGGCTCATCCGCGCCCGCTTC
GCCAGAGACGCTGAACAGCAACGATCCGCTGGGGCTGCTGATGGGCGGCGCCGTGCCGCTGGCTCAGCCGGAGGAAGCGG
TACTGCCGCCGTCCCCGCCGCCAGCACCGGCTCCGGCCGCCGCACAGCCGGTAGCGCCGCGCCCTCAGCCAACGCCGCCG
CCCGTGCAGATGCCCGAACCGCAATCCCAACCCGCACCGCAGTTCAGCCCGCAGGAGCCGCCGCGTCCGCGCCAGGGCAA
CCGCCTGGGCATCGATCCGGTTGCCTACCAGTCCTCTCAGCGGCAGCACGCTGCCGCGCCGAATGGCGACACCTTGGAAG
GACCGTTGCTGGCGGCGCTGCTGCAAGGCATCGGTCTCGACGATCTGCAGCCGCAGCCGCATTTCGACGAACAACAGATC
CGCCTGGCCGGGCGCCTGCTGAGCCTATTCTCGCAAGGCACCGTCGCCCTGCTCTCATCCCGCTCGATCCTCAAGCGCGG
CGTGAAGGCCGAGATGACCATGATCCTCGACGAAGCCAACAATCCGTTCAAGTTGCTACCTTCGGGCAAAACGGTGCTGA
TGCAGATGTTCGGCAGCCAGATGCCGGGCTTTATGCCGCCGGAGCAGGCGGTGCGCGACGCGCTGATCGACCTGCAGGCG
CACCAGTTGGGGATGATCGCCGGCATTCGCGCCATCATCGCCGCCATGCTGCAGTCGTTTAACCCGGAACGTCTCGAAGA
AGAAGCGCGCAAGGAAGGCGTGGCGCCGCGTCTGTCGCTGCCCGCCAACCGCAAGGCCGCGCTGTGGGACTACTTCGTGA
AGAACTATCAGCAAACCTCCGGCGAAATCGAGGACGATTTCCACACCCTGTTCGGCGAAGCCTTCCTGCACGCCTATGAC
GTTGAAGTGAATCAATACAAAGACTCACAGACCAAACCGGACGCGTAA