Detailed information of component protein
Summary
| Component ID | T6CP259560 |
| Component protein type | PppA |
| T6SS ID (Type) | T6SS17505  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (258 a.a.); Nucleotide sequence (774 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS13925 |
| Coordinate (Strand) | 592618..593391 (-) |
| NCBI ID | WP_004934976.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | A0A6I4GV12_SERMA |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PP2C_2 | PF13672.8 | 2.7e-14 | 8..198 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-257 | MNITIASTSNQGGRASNQDQTGEVLGNRAACFVVCDGIAGFPGGDIAAKLARDTILQNFDGEKHLNAQSIRQHITSANAAIHQQQRQSDEYSKMGTTLVSLFIDRDYQLAYWAHAGDSRLYLFRRGYLHAVTTDHSLIQQMQDAGYQTNGINSNLLYFALGLNEERDATYSDVLQLEDGDVFLLCTDGFWHSFSQAELEQSLHMVNSPSEWIALMQQAWKKNNNSDNYSAIAVWIGSPQETTLLHSLADAERFLSRD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9029 | - | - |
Protein sequence: 258 a.a.
>T6CP259560 NZ_PQGJ01000003:c593391-592618 [Serratia marcescens] [PppA]
MNITIASTSNQGGRASNQDQTGEVLGNRAACFVVCDGIAGFPGGDIAAKLARDTILQNFDGEKHLNAQSIRQHITSANAA
IHQQQRQSDEYSKMGTTLVSLFIDRDYQLAYWAHAGDSRLYLFRRGYLHAVTTDHSLIQQMQDAGYQTNGINSNLLYFAL
GLNEERDATYSDVLQLEDGDVFLLCTDGFWHSFSQAELEQSLHMVNSPSEWIALMQQAWKKNNNSDNYSAIAVWIGSPQE
TTLLHSLADAERFLSRD*
MNITIASTSNQGGRASNQDQTGEVLGNRAACFVVCDGIAGFPGGDIAAKLARDTILQNFDGEKHLNAQSIRQHITSANAA
IHQQQRQSDEYSKMGTTLVSLFIDRDYQLAYWAHAGDSRLYLFRRGYLHAVTTDHSLIQQMQDAGYQTNGINSNLLYFAL
GLNEERDATYSDVLQLEDGDVFLLCTDGFWHSFSQAELEQSLHMVNSPSEWIALMQQAWKKNNNSDNYSAIAVWIGSPQE
TTLLHSLADAERFLSRD*
Nucleotide sequence: 774 bp
>T6CP259560 NZ_PQGJ01000003:c593391-592618 [Serratia marcescens] [PppA]
ATGAATATCACCATAGCCTCTACCTCCAACCAGGGCGGCCGCGCCTCCAACCAGGATCAGACCGGCGAGGTGCTCGGCAA
CCGCGCCGCCTGCTTCGTGGTGTGCGACGGCATCGCCGGTTTTCCGGGCGGCGATATCGCCGCCAAACTGGCGCGCGACA
CCATTTTGCAAAACTTCGACGGCGAAAAGCACCTGAATGCCCAGAGCATTCGTCAGCACATCACCAGCGCCAACGCCGCC
ATCCACCAGCAGCAGCGGCAGTCGGACGAATACAGCAAGATGGGCACCACGCTGGTCAGTCTGTTTATCGATCGCGATTA
CCAGCTGGCCTACTGGGCGCACGCCGGCGACAGCCGCCTGTACCTGTTCCGCCGCGGCTACCTGCATGCCGTCACCACCG
ACCACAGCCTGATCCAACAGATGCAGGACGCCGGCTACCAGACCAACGGCATCAACAGCAACCTGCTGTATTTCGCGCTG
GGGCTCAACGAAGAGCGCGACGCCACCTACAGTGACGTGCTGCAGCTGGAAGACGGCGACGTTTTCCTGCTGTGCACCGA
CGGCTTCTGGCACAGCTTCAGCCAGGCCGAACTGGAACAGTCGCTGCACATGGTCAACTCCCCCAGCGAGTGGATCGCCC
TGATGCAGCAGGCATGGAAGAAAAACAATAACAGCGATAACTACAGCGCTATCGCCGTCTGGATTGGCTCACCGCAGGAA
ACCACCCTGCTGCATTCGCTGGCGGATGCGGAGCGGTTTCTGAGCCGCGACTGA
ATGAATATCACCATAGCCTCTACCTCCAACCAGGGCGGCCGCGCCTCCAACCAGGATCAGACCGGCGAGGTGCTCGGCAA
CCGCGCCGCCTGCTTCGTGGTGTGCGACGGCATCGCCGGTTTTCCGGGCGGCGATATCGCCGCCAAACTGGCGCGCGACA
CCATTTTGCAAAACTTCGACGGCGAAAAGCACCTGAATGCCCAGAGCATTCGTCAGCACATCACCAGCGCCAACGCCGCC
ATCCACCAGCAGCAGCGGCAGTCGGACGAATACAGCAAGATGGGCACCACGCTGGTCAGTCTGTTTATCGATCGCGATTA
CCAGCTGGCCTACTGGGCGCACGCCGGCGACAGCCGCCTGTACCTGTTCCGCCGCGGCTACCTGCATGCCGTCACCACCG
ACCACAGCCTGATCCAACAGATGCAGGACGCCGGCTACCAGACCAACGGCATCAACAGCAACCTGCTGTATTTCGCGCTG
GGGCTCAACGAAGAGCGCGACGCCACCTACAGTGACGTGCTGCAGCTGGAAGACGGCGACGTTTTCCTGCTGTGCACCGA
CGGCTTCTGGCACAGCTTCAGCCAGGCCGAACTGGAACAGTCGCTGCACATGGTCAACTCCCCCAGCGAGTGGATCGCCC
TGATGCAGCAGGCATGGAAGAAAAACAATAACAGCGATAACTACAGCGCTATCGCCGTCTGGATTGGCTCACCGCAGGAA
ACCACCCTGCTGCATTCGCTGGCGGATGCGGAGCGGTTTCTGAGCCGCGACTGA