Detailed information of component protein
Summary
| Component ID | T6CP259559 |
| Component protein type | TagJ |
| T6SS ID (Type) | T6SS17505  (Type i3) |
| Strain | Serratia marcescens strain KZ11 |
| Replicon | chromosome |
| Sequence | Protein sequence (268 a.a.); Nucleotide sequence (804 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | C3R39_RS13915 |
| Coordinate (Strand) | 590766..591569 (-) |
| NCBI ID | WP_048324037.1 |
| RefSeq | NZ_PQGJ01000003 |
| Uniprot ID | UPI00065104AB |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| ImpE | PF07024.15 | 1.7e-40 | 143..261 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-267 | MLQGQSIGAAITAVENDIKAKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFAGTAAPALLRQDQPWLKLMVQALHQDVQGAAEQAQALRDEALEAAPAGAGRLTLAEGEQERQLRFDWLTDGDGRLGPVCELALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLPEGSDDALLLGKRTEWQPLGDGTHYAGLGLKTWLSESDEFPLHSLRQLSFDASA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9306 | - | - |
Protein sequence: 268 a.a.
>T6CP259559 NZ_PQGJ01000003:c591569-590766 [Serratia marcescens] [TagJ]
MLQGQSIGAAITAVENDIKAKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFA
GTAAPALLRQDQPWLKLMVQALHQDVQGAAEQAQALRDEALEAAPAGAGRLTLAEGEQERQLRFDWLTDGDGRLGPVCEL
ALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLPEGSDDALLLGKRTEWQPLGDGTHYAG
LGLKTWLSESDEFPLHSLRQLSFDASA*
MLQGQSIGAAITAVENDIKAKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFA
GTAAPALLRQDQPWLKLMVQALHQDVQGAAEQAQALRDEALEAAPAGAGRLTLAEGEQERQLRFDWLTDGDGRLGPVCEL
ALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLPEGSDDALLLGKRTEWQPLGDGTHYAG
LGLKTWLSESDEFPLHSLRQLSFDASA*
Nucleotide sequence: 804 bp
>T6CP259559 NZ_PQGJ01000003:c591569-590766 [Serratia marcescens] [TagJ]
ATGCTGCAAGGCCAGTCGATCGGCGCGGCCATCACCGCCGTCGAAAACGATATCAAGGCGAAACCGGCGGATGCCGACCT
GCGCGCCGCGCTGGTGCAACTGCTGTGCCTGAGCGGCAACTGGACGCGCGCCAACGCGCAGCTGAAATCCTGGCAGGCGC
TGAAACCGATCGCCCAACCGACCACGCTGCTGCTGATGCAGTCAGTCAACGCCGAGCTGCAACGCCAGGCGGTGTTTGCC
GGCACGGCCGCGCCGGCGCTGCTGCGGCAGGATCAGCCTTGGCTGAAACTGATGGTGCAGGCGCTGCATCAGGATGTGCA
AGGGGCGGCCGAACAGGCCCAGGCGCTGCGCGATGAAGCGCTGGAGGCCGCCCCGGCCGGCGCCGGGCGGTTAACGCTGG
CCGAAGGCGAACAAGAACGGCAGTTGCGTTTCGACTGGCTGACCGACGGTGACGGCCGCCTCGGGCCAGTATGCGAACTG
GCGCTGAACGGCGTTTACTACTGGCTGCCGTTTGCCGACATCGCCGCGATCCAGTTTCAGGCGCCGCAGAGCGCCATCGA
CCTGGTGTGGAGCCATGCGCTGGTGCGCCTGACCGATGGCCGCGAACAGGTGTGCCAACTGCCCGCCCGTTACCCGCTAC
CCGAAGGCAGCGACGACGCGCTGCTGCTCGGCAAACGCACCGAATGGCAACCGCTGGGCGACGGCACCCACTATGCGGGG
CTGGGCCTGAAAACCTGGCTCAGCGAAAGCGATGAATTCCCACTGCACAGCCTGCGGCAGCTGAGCTTCGACGCGAGCGC
CTGA
ATGCTGCAAGGCCAGTCGATCGGCGCGGCCATCACCGCCGTCGAAAACGATATCAAGGCGAAACCGGCGGATGCCGACCT
GCGCGCCGCGCTGGTGCAACTGCTGTGCCTGAGCGGCAACTGGACGCGCGCCAACGCGCAGCTGAAATCCTGGCAGGCGC
TGAAACCGATCGCCCAACCGACCACGCTGCTGCTGATGCAGTCAGTCAACGCCGAGCTGCAACGCCAGGCGGTGTTTGCC
GGCACGGCCGCGCCGGCGCTGCTGCGGCAGGATCAGCCTTGGCTGAAACTGATGGTGCAGGCGCTGCATCAGGATGTGCA
AGGGGCGGCCGAACAGGCCCAGGCGCTGCGCGATGAAGCGCTGGAGGCCGCCCCGGCCGGCGCCGGGCGGTTAACGCTGG
CCGAAGGCGAACAAGAACGGCAGTTGCGTTTCGACTGGCTGACCGACGGTGACGGCCGCCTCGGGCCAGTATGCGAACTG
GCGCTGAACGGCGTTTACTACTGGCTGCCGTTTGCCGACATCGCCGCGATCCAGTTTCAGGCGCCGCAGAGCGCCATCGA
CCTGGTGTGGAGCCATGCGCTGGTGCGCCTGACCGATGGCCGCGAACAGGTGTGCCAACTGCCCGCCCGTTACCCGCTAC
CCGAAGGCAGCGACGACGCGCTGCTGCTCGGCAAACGCACCGAATGGCAACCGCTGGGCGACGGCACCCACTATGCGGGG
CTGGGCCTGAAAACCTGGCTCAGCGAAAGCGATGAATTCCCACTGCACAGCCTGCGGCAGCTGAGCTTCGACGCGAGCGC
CTGA