Detailed information of component protein


Summary

Component ID T6CP259559
Component protein type TagJ
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (268 a.a.); Nucleotide sequence (804 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) C3R39_RS13915
Coordinate (Strand) 590766..591569 (-)
NCBI ID WP_048324037.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI00065104AB
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpE PF07024.15 1.7e-40 143..261

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-267 MLQGQSIGAAITAVENDIKAKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFAGTAAPALLRQDQPWLKLMVQALHQDVQGAAEQAQALRDEALEAAPAGAGRLTLAEGEQERQLRFDWLTDGDGRLGPVCELALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLPEGSDDALLLGKRTEWQPLGDGTHYAGLGLKTWLSESDEFPLHSLRQLSFDASA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9306 - -



  Protein sequence: 268 a.a.    

>T6CP259559 NZ_PQGJ01000003:c591569-590766 [Serratia marcescens] [TagJ]
MLQGQSIGAAITAVENDIKAKPADADLRAALVQLLCLSGNWTRANAQLKSWQALKPIAQPTTLLLMQSVNAELQRQAVFA
GTAAPALLRQDQPWLKLMVQALHQDVQGAAEQAQALRDEALEAAPAGAGRLTLAEGEQERQLRFDWLTDGDGRLGPVCEL
ALNGVYYWLPFADIAAIQFQAPQSAIDLVWSHALVRLTDGREQVCQLPARYPLPEGSDDALLLGKRTEWQPLGDGTHYAG
LGLKTWLSESDEFPLHSLRQLSFDASA*

  Nucleotide sequence: 804 bp    

>T6CP259559 NZ_PQGJ01000003:c591569-590766 [Serratia marcescens] [TagJ]
ATGCTGCAAGGCCAGTCGATCGGCGCGGCCATCACCGCCGTCGAAAACGATATCAAGGCGAAACCGGCGGATGCCGACCT
GCGCGCCGCGCTGGTGCAACTGCTGTGCCTGAGCGGCAACTGGACGCGCGCCAACGCGCAGCTGAAATCCTGGCAGGCGC
TGAAACCGATCGCCCAACCGACCACGCTGCTGCTGATGCAGTCAGTCAACGCCGAGCTGCAACGCCAGGCGGTGTTTGCC
GGCACGGCCGCGCCGGCGCTGCTGCGGCAGGATCAGCCTTGGCTGAAACTGATGGTGCAGGCGCTGCATCAGGATGTGCA
AGGGGCGGCCGAACAGGCCCAGGCGCTGCGCGATGAAGCGCTGGAGGCCGCCCCGGCCGGCGCCGGGCGGTTAACGCTGG
CCGAAGGCGAACAAGAACGGCAGTTGCGTTTCGACTGGCTGACCGACGGTGACGGCCGCCTCGGGCCAGTATGCGAACTG
GCGCTGAACGGCGTTTACTACTGGCTGCCGTTTGCCGACATCGCCGCGATCCAGTTTCAGGCGCCGCAGAGCGCCATCGA
CCTGGTGTGGAGCCATGCGCTGGTGCGCCTGACCGATGGCCGCGAACAGGTGTGCCAACTGCCCGCCCGTTACCCGCTAC
CCGAAGGCAGCGACGACGCGCTGCTGCTCGGCAAACGCACCGAATGGCAACCGCTGGGCGACGGCACCCACTATGCGGGG
CTGGGCCTGAAAACCTGGCTCAGCGAAAGCGATGAATTCCCACTGCACAGCCTGCGGCAGCTGAGCTTCGACGCGAGCGC
CTGA