Detailed information of component protein


Summary

Component ID T6CP259557
Component protein type TssF
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (629 a.a.); Nucleotide sequence (1887 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13905
Coordinate (Strand) 588297..590183 (-)
NCBI ID WP_089184749.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000B5FAA18
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3e-229 1..625
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-628 MDSKLLDYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRVQLKMDAEFPRFSQRLLEIIYPNYLSPTPSMAIAELQPDSSKGDISNGFVVPRGTMMDSQTLKKSGITCSYTTAHDVTLQPVRIAGVELGGIPADIPLASLGLQHSGCVSALRIRLECYESVTLNNLQLDQLMFYLAGPDMQAQQLLELLMQHSVGLICQTVEPQPQRRALALDGLRQEGFAAEQALLPNDLRNFEGYRLLQEYFAFPARFQFFSVNGLRPLLQSVREGKKGLRQFEIVVLLDRHDAALERVVDAAHLALHCTPVINLFPKVAERIAINEKNHEYHLVVDNIRPLDYEVFSVQRLGGSASEKRYEQEFRPFYSTLSADDGNYGAYFSLRREQRTLSEHARRYGTRTGYAGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLLQQDQGNFVMPDSIPIKQVSLRKGPTPPRPALAEGMITWRLISQLQLNYLSMMDGDPEQGAASLRQLLGLYGNLSEPAIAKQIQGVRHCNLRPVYRRVPEPGPIVFARGIAIDLTVDEQAFSGNSPYLLGSVLERLFSRLVAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9964 - -


  Protein sequence: 629 a.a.    

>T6CP259557 NZ_PQGJ01000003:c590183-588297 [Serratia marcescens] [TssF]
MDSKLLDYYNRELAYLREMGAEFAEQYPKVAGRLGMRGIDVADPYIERLMEGFAFLTSRVQLKMDAEFPRFSQRLLEIIY
PNYLSPTPSMAIAELQPDSSKGDISNGFVVPRGTMMDSQTLKKSGITCSYTTAHDVTLQPVRIAGVELGGIPADIPLASL
GLQHSGCVSALRIRLECYESVTLNNLQLDQLMFYLAGPDMQAQQLLELLMQHSVGLICQTVEPQPQRRALALDGLRQEGF
AAEQALLPNDLRNFEGYRLLQEYFAFPARFQFFSVNGLRPLLQSVREGKKGLRQFEIVVLLDRHDAALERVVDAAHLALH
CTPVINLFPKVAERIAINEKNHEYHLVVDNIRPLDYEVFSVQRLGGSASEKRYEQEFRPFYSTLSADDGNYGAYFSLRRE
QRTLSEHARRYGTRTGYAGSEVFVSLVDERQSPWHSDLKYLTADVLCTSRDLPLMLLQQDQGNFVMPDSIPIKQVSLRKG
PTPPRPALAEGMITWRLISQLQLNYLSMMDGDPEQGAASLRQLLGLYGNLSEPAIAKQIQGVRHCNLRPVYRRVPEPGPI
VFARGIAIDLTVDEQAFSGNSPYLLGSVLERLFSRLVAMNTFTEMTLSSQQRGEIAHWQARMGKRTLI*

  Nucleotide sequence: 1887 bp    

>T6CP259557 NZ_PQGJ01000003:c590183-588297 [Serratia marcescens] [TssF]
ATGGACAGTAAACTGTTAGATTATTACAACCGCGAGCTGGCCTATCTGCGTGAGATGGGCGCCGAGTTCGCCGAACAGTA
CCCGAAGGTCGCGGGCCGTCTCGGCATGCGCGGCATCGACGTGGCAGACCCTTATATCGAGCGCCTGATGGAAGGCTTCG
CCTTCCTCACCTCGCGCGTGCAGTTGAAAATGGACGCCGAGTTCCCGCGCTTTTCTCAGCGCTTGCTGGAGATCATCTAC
CCCAACTACCTGTCGCCGACGCCGTCGATGGCGATCGCCGAACTGCAGCCGGACAGCAGCAAGGGCGATATCAGCAACGG
CTTCGTGGTGCCGCGCGGCACCATGATGGACAGCCAGACGCTGAAGAAAAGCGGCATCACCTGCAGTTACACCACGGCGC
ATGACGTCACGCTGCAGCCGGTGCGCATCGCCGGCGTCGAGCTGGGCGGCATTCCGGCCGATATTCCGCTGGCCTCGCTG
GGGCTGCAGCACAGCGGCTGCGTCAGCGCACTGCGCATTCGTCTCGAGTGCTACGAAAGCGTGACGCTCAACAACCTGCA
GCTGGACCAGCTGATGTTTTATCTGGCCGGGCCGGACATGCAGGCGCAGCAGCTGCTGGAACTGCTGATGCAGCACAGCG
TCGGGTTGATCTGCCAAACGGTGGAACCGCAACCGCAGCGGCGGGCGCTGGCGCTGGACGGACTGCGGCAGGAGGGCTTC
GCCGCCGAGCAGGCGCTGCTGCCCAACGACCTGCGCAACTTTGAAGGCTACCGGCTGCTGCAGGAGTATTTCGCTTTCCC
GGCGCGCTTCCAGTTTTTCAGCGTCAACGGCCTGCGTCCGCTGCTGCAGAGCGTGCGCGAAGGGAAAAAGGGGCTGCGCC
AGTTCGAGATCGTGGTGCTGCTGGATCGGCATGACGCCGCGCTGGAACGGGTGGTCGACGCCGCCCATTTGGCGCTGCAC
TGCACGCCGGTGATCAACCTGTTTCCGAAGGTCGCCGAACGCATCGCGATCAACGAAAAAAACCACGAATACCATCTGGT
GGTCGACAATATCCGGCCGCTGGATTACGAAGTGTTTTCGGTGCAGCGGCTCGGCGGCAGCGCCAGCGAAAAACGCTACG
AGCAAGAGTTTCGGCCGTTTTACAGCACCCTGAGCGCGGACGATGGCAACTATGGCGCCTACTTCTCGCTGCGGCGCGAA
CAGCGCACCCTGTCGGAACACGCCCGCCGCTACGGCACCCGCACCGGTTATGCCGGTTCGGAAGTGTTCGTGTCGTTGGT
GGACGAACGGCAATCGCCGTGGCACAGCGATCTGAAATACCTCACCGCCGACGTGCTGTGCACCAGCCGCGACCTGCCGT
TGATGCTGTTGCAACAGGATCAGGGCAACTTCGTGATGCCCGATTCGATCCCGATCAAGCAGGTCTCGCTGCGCAAAGGC
CCCACCCCGCCGCGCCCGGCGCTGGCTGAAGGGATGATCACCTGGCGGCTGATCAGCCAACTGCAGCTGAACTACCTCAG
CATGATGGACGGCGATCCGGAACAGGGCGCCGCCAGCCTGCGCCAGCTGCTGGGGCTGTACGGCAACCTGAGCGAGCCGG
CGATCGCCAAACAGATCCAGGGCGTGCGCCACTGCAACCTGCGGCCGGTCTATCGGCGTGTGCCGGAGCCCGGCCCCATC
GTATTCGCACGCGGCATCGCCATCGATCTGACGGTCGATGAACAGGCGTTCTCCGGCAACAGCCCTTACCTGCTCGGCAG
CGTGCTGGAGCGCCTGTTCTCGCGCCTGGTGGCGATGAACACCTTCACCGAGATGACGCTCTCCAGCCAGCAGCGTGGCG
AAATCGCCCACTGGCAGGCGCGCATGGGCAAAAGGACGCTGATATGA