Detailed information of component protein


Summary

Component ID T6CP259556
Component protein type TssG
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13900
Coordinate (Strand) 587230..588300 (-)
NCBI ID WP_103687227.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDB2B2A
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 5e-100 33..333
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-356 MSAEMIATELAPPQINALYRLPDDFWPRLRSAPYKHDLFQLLRRIDAQGGQPYLLGRAPLPRHEMLRLGQEPSLSFAPSTLAQVTPRANGPLHDVSIFSFGLFGPNGPLPLHLTEYVRERVYHHQDTTLLAFTNLFHHRLTLLFYRAWADAQPTVSLDRPDNRRFDEYLSSLIGIGQPAQQERDNINAHAKHFMAGHLIRHSRDPEGLSKILQQYFKVPVRIVENVPHWLRVEPREQARLKAGRGAPRLGESAFLGIAVRDIQHKFRIELGPMPQQDYDRFLPGADLCRQLRDWVRQYLGIEFVWEVRLILAKEQAHGTQLGGAQRLGLSSWLANHRRQRDLDDLIFSPEPLENPF


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 357 a.a.    

>T6CP259556 NZ_PQGJ01000003:c588300-587230 [Serratia marcescens] [TssG]
MSAEMIATELAPPQINALYRLPDDFWPRLRSAPYKHDLFQLLRRIDAQGGQPYLLGRAPLPRHEMLRLGQEPSLSFAPST
LAQVTPRANGPLHDVSIFSFGLFGPNGPLPLHLTEYVRERVYHHQDTTLLAFTNLFHHRLTLLFYRAWADAQPTVSLDRP
DNRRFDEYLSSLIGIGQPAQQERDNINAHAKHFMAGHLIRHSRDPEGLSKILQQYFKVPVRIVENVPHWLRVEPREQARL
KAGRGAPRLGESAFLGIAVRDIQHKFRIELGPMPQQDYDRFLPGADLCRQLRDWVRQYLGIEFVWEVRLILAKEQAHGTQ
LGGAQRLGLSSWLANHRRQRDLDDLIFSPEPLENPF*

  Nucleotide sequence: 1071 bp    

>T6CP259556 NZ_PQGJ01000003:c588300-587230 [Serratia marcescens] [TssG]
ATGAGCGCGGAAATGATCGCCACCGAACTGGCGCCGCCGCAGATCAACGCGCTGTATCGCCTGCCGGACGACTTCTGGCC
GCGGCTGCGCAGCGCGCCTTACAAACACGATCTGTTTCAGCTGCTGCGGCGCATCGACGCCCAGGGCGGCCAACCCTACC
TGCTGGGGCGCGCGCCGCTGCCGCGCCACGAGATGCTGCGCCTGGGCCAGGAGCCGTCGCTGTCGTTCGCGCCCTCCACG
CTGGCGCAGGTGACGCCGCGCGCCAACGGCCCGCTGCACGACGTTTCGATCTTCAGTTTCGGCCTGTTCGGCCCCAACGG
GCCGCTGCCGCTGCACCTGACCGAATACGTGCGCGAACGGGTATACCACCATCAGGACACCACCCTGCTGGCGTTCACCA
ACCTGTTCCATCACCGCCTGACGCTGCTGTTTTACCGCGCCTGGGCCGACGCGCAGCCGACGGTATCGCTGGATCGCCCG
GACAACCGGCGCTTCGACGAGTACCTGTCGAGCCTGATCGGCATCGGCCAGCCGGCGCAGCAGGAACGCGACAACATCAA
CGCCCACGCCAAGCATTTTATGGCCGGTCATCTGATTCGCCACAGCCGCGATCCGGAAGGCCTGAGCAAAATTTTGCAGC
AGTATTTCAAGGTGCCGGTGCGCATCGTCGAAAACGTGCCGCACTGGCTGCGGGTGGAGCCGCGCGAGCAGGCGCGGCTC
AAGGCCGGGCGCGGCGCGCCGCGGCTCGGCGAGTCGGCCTTTCTCGGCATCGCGGTGCGCGATATTCAGCACAAGTTCCG
CATCGAGCTGGGGCCGATGCCGCAGCAGGACTATGACCGTTTCTTGCCGGGCGCAGACCTGTGCCGGCAACTGCGCGACT
GGGTGCGCCAATATCTGGGCATCGAGTTCGTCTGGGAAGTGCGCCTGATCCTGGCAAAGGAACAGGCGCACGGCACCCAG
CTCGGCGGCGCGCAGCGATTGGGCCTGAGCAGTTGGCTGGCCAACCATCGGCGACAGCGCGATCTCGACGATCTGATCTT
CAGCCCTGAACCGCTGGAAAATCCGTTCTGA