Detailed information of component protein


Summary

Component ID T6CP259555
Component protein type TssH
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (885 a.a.); Nucleotide sequence (2655 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13895
Coordinate (Strand) 584519..587173 (-)
NCBI ID WP_103687226.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDA522E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.7e-38 615..780
AAA_lid_9 PF17871.3 2.1e-26 365..457
ClpB_D2-small PF10431.11 9.5e-14 788..863
AAA PF00004.31 7.7e-10 226..359
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-884 MSEISRSVLFGKLDSLLFTSLESATAFCKLRGNPYVELAHWLHQLMQSPDGDLQQIVRHFTLDEAQLARDIVEALDRLPRGASAISDLSEHIDSAVERAWVYGSLKFGASRIRGGHLLLGILKTYSLRHLLKAISPQFERINADLLMEQFAAITAHSAENAQDAPAESRAENASGAARSGESVLAQYAQDLTARARDGEIDPVAGRDEEIRQIIDILMRRRQNNPLLTGEAGVGKTAVVEGLALRIVAGDVPPQLRDVKLCLLDIGMLQAGAGVKGEFEKRLQAVIDEVQSSPTPIILFIDEIHTLIGAGGAQGTGDAANLLKPALARGQLRTIGATTWSEYKKYIEKDPALTRRFQVVQVHEPSEDKALLMLRSTVSPLEQHHRVLLLDEAVDAAVRLSHRYIPARQLPDKAVALLDTACARVAVSQHAEPAQVEDCRHRIDALQIELDIARREAKVGIGDPLRPQEIEAQLTALRLELEQLTERWQQELTLIQEIITLRAQLHRQEAEPADEETEAAPDADALRAQLGELQQQLSALQGEAPLIFAAVDANIVAAVVADWTGIPLGRMVKNEIEAVLQLSDTLNQRVIGQRHALDLIARRVRTSRARLDDPNKPVGVFLLAGPSGVGKTETALALAETLYGGEQNVITINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTIIILTSNVGTELIAGLCSDPELLPEPEALSGALRQPLLSVFPAALLGRLLVVPYYPLTDATLGNIVRLQLGRIQRRLAENHDIVCTFDDAVIEQIVSRCTEVESGGRMVDAILTNTLLPQISHTLLTGSANDQRYRQLHIALQNHEFICQFQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9608 - -


  Protein sequence: 885 a.a.    

>T6CP259555 NZ_PQGJ01000003:c587173-584519 [Serratia marcescens] [TssH]
MSEISRSVLFGKLDSLLFTSLESATAFCKLRGNPYVELAHWLHQLMQSPDGDLQQIVRHFTLDEAQLARDIVEALDRLPR
GASAISDLSEHIDSAVERAWVYGSLKFGASRIRGGHLLLGILKTYSLRHLLKAISPQFERINADLLMEQFAAITAHSAEN
AQDAPAESRAENASGAARSGESVLAQYAQDLTARARDGEIDPVAGRDEEIRQIIDILMRRRQNNPLLTGEAGVGKTAVVE
GLALRIVAGDVPPQLRDVKLCLLDIGMLQAGAGVKGEFEKRLQAVIDEVQSSPTPIILFIDEIHTLIGAGGAQGTGDAAN
LLKPALARGQLRTIGATTWSEYKKYIEKDPALTRRFQVVQVHEPSEDKALLMLRSTVSPLEQHHRVLLLDEAVDAAVRLS
HRYIPARQLPDKAVALLDTACARVAVSQHAEPAQVEDCRHRIDALQIELDIARREAKVGIGDPLRPQEIEAQLTALRLEL
EQLTERWQQELTLIQEIITLRAQLHRQEAEPADEETEAAPDADALRAQLGELQQQLSALQGEAPLIFAAVDANIVAAVVA
DWTGIPLGRMVKNEIEAVLQLSDTLNQRVIGQRHALDLIARRVRTSRARLDDPNKPVGVFLLAGPSGVGKTETALALAET
LYGGEQNVITINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMED
GEGRHIDFRNTIIILTSNVGTELIAGLCSDPELLPEPEALSGALRQPLLSVFPAALLGRLLVVPYYPLTDATLGNIVRLQ
LGRIQRRLAENHDIVCTFDDAVIEQIVSRCTEVESGGRMVDAILTNTLLPQISHTLLTGSANDQRYRQLHIALQNHEFIC
QFQA*

  Nucleotide sequence: 2655 bp    

>T6CP259555 NZ_PQGJ01000003:c587173-584519 [Serratia marcescens] [TssH]
ATGTCTGAAATCAGCCGCTCGGTATTATTTGGCAAACTGGATAGCCTGTTATTCACCTCTCTGGAAAGTGCGACGGCGTT
TTGCAAGCTGCGCGGTAACCCCTACGTCGAATTGGCGCACTGGCTGCATCAGCTGATGCAATCGCCGGACGGCGATCTGC
AGCAGATCGTTCGCCACTTCACGCTGGACGAAGCGCAGCTGGCGCGCGACATCGTCGAGGCGCTCGATCGCCTGCCGCGC
GGCGCCAGCGCCATCTCCGATCTGTCCGAGCACATCGACAGCGCGGTAGAACGCGCCTGGGTCTATGGCTCATTGAAATT
CGGCGCATCGCGCATCCGCGGCGGCCACCTGCTGCTCGGCATTCTGAAAACCTACAGCCTGCGCCATCTGCTGAAGGCCA
TTTCCCCGCAGTTCGAGCGCATCAACGCCGATCTGTTGATGGAGCAGTTCGCCGCCATTACCGCTCACTCGGCGGAAAAC
GCCCAGGATGCGCCGGCGGAAAGCCGCGCCGAGAACGCATCCGGCGCGGCGCGCAGCGGTGAAAGCGTGCTGGCGCAGTA
TGCCCAGGATCTGACCGCCAGAGCGCGCGACGGCGAGATCGACCCGGTGGCCGGCCGCGATGAAGAGATCCGGCAAATCA
TCGATATCCTGATGCGCCGCCGCCAGAACAACCCGCTGCTGACCGGCGAGGCCGGCGTCGGCAAAACCGCGGTGGTGGAG
GGCCTGGCGCTGCGCATCGTGGCTGGCGACGTGCCGCCGCAGCTGCGCGACGTGAAGCTGTGCCTGTTGGACATCGGCAT
GCTGCAGGCCGGCGCCGGCGTTAAGGGCGAGTTTGAAAAACGGCTGCAGGCGGTGATCGACGAAGTGCAGTCCAGCCCGA
CGCCAATCATCCTGTTTATCGACGAAATTCACACACTGATCGGCGCCGGCGGCGCCCAGGGCACCGGCGACGCCGCCAAC
CTGCTGAAACCGGCGCTGGCGCGCGGCCAACTGCGCACCATTGGCGCCACCACCTGGTCGGAATACAAGAAATACATCGA
GAAAGACCCGGCGCTCACCCGCCGTTTCCAGGTGGTGCAGGTGCACGAACCGAGCGAAGACAAAGCGCTGCTGATGCTGC
GCAGCACCGTCAGCCCGCTGGAGCAACACCACCGCGTGCTGCTGCTGGATGAAGCGGTGGATGCCGCGGTGCGGCTGTCC
CATCGCTATATTCCAGCCCGCCAGTTGCCGGACAAGGCGGTGGCGCTGCTGGATACCGCCTGCGCGCGCGTGGCGGTCAG
CCAACACGCCGAGCCCGCCCAGGTTGAAGACTGCCGCCATCGCATCGATGCGCTGCAGATCGAATTGGATATCGCCCGCC
GCGAGGCCAAGGTCGGCATCGGCGATCCCCTGCGCCCGCAGGAGATTGAAGCTCAGCTGACCGCGCTGCGCCTGGAGCTC
GAACAACTGACCGAGCGCTGGCAGCAAGAGCTGACGCTGATCCAAGAGATCATCACGCTGCGCGCCCAGCTGCACCGGCA
GGAAGCGGAGCCTGCCGACGAAGAAACGGAGGCGGCCCCTGACGCCGACGCGCTGCGCGCCCAGCTGGGCGAACTGCAGC
AGCAGCTGAGCGCGCTGCAGGGCGAGGCGCCGCTGATCTTCGCCGCCGTCGACGCCAACATCGTGGCGGCGGTAGTGGCC
GACTGGACCGGCATCCCGCTGGGCCGCATGGTGAAAAACGAGATTGAGGCGGTGCTGCAACTCTCCGACACCCTGAACCA
GCGCGTGATCGGCCAACGCCATGCGCTGGATCTGATCGCCCGCCGGGTGCGCACTTCGCGGGCACGGCTGGACGATCCGA
ACAAGCCGGTCGGGGTGTTCCTGCTGGCCGGGCCGTCCGGCGTCGGCAAGACCGAAACCGCGCTGGCGCTGGCGGAAACC
CTGTACGGCGGCGAGCAGAACGTCATCACCATCAACATGAGCGAATTCCAGGAGTCGCACACCGTTTCGACGCTGAAAGG
CGCGCCCCCCGGCTATGTCGGCTACGGCGAAGGCGGCGTGCTGACCGAGGCGGTGCGCCGCCGCCCATACAGCGTGGTGC
TGTTGGACGAAATCGAGAAGGCGCACCCGGACGTGCATGAAATCTTCTTCCAGGTGTTCGACAAGGGCTGGATGGAGGAC
GGCGAAGGCCGCCATATCGATTTCCGCAACACCATCATCATCCTGACCTCCAACGTCGGCACCGAGCTGATCGCCGGGCT
GTGCAGCGATCCGGAGCTGCTGCCGGAGCCGGAAGCGCTGAGCGGCGCGCTGCGCCAGCCGCTGCTGTCGGTGTTCCCGG
CCGCCTTGCTCGGCCGCCTGCTGGTGGTGCCGTATTACCCGCTGACCGACGCCACGCTGGGCAATATCGTGCGCCTGCAG
CTGGGCCGCATTCAGCGCCGCCTGGCGGAGAATCACGACATCGTCTGCACCTTCGACGACGCGGTCATCGAGCAGATCGT
CAGCCGCTGCACCGAGGTGGAGTCCGGCGGCCGCATGGTTGACGCCATCCTGACCAACACCCTGCTGCCGCAGATCAGCC
ACACCCTGCTGACCGGCAGCGCCAACGACCAGCGCTATCGCCAGCTGCATATCGCGCTGCAGAACCACGAATTCATTTGT
CAATTTCAGGCATAA