Detailed information of component protein


Summary

Component ID T6CP259554
Component protein type PpkA
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (482 a.a.); Nucleotide sequence (1446 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13890
Coordinate (Strand) 583024..584469 (-)
NCBI ID WP_103687225.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDA9FFC
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Pkinase PF00069.27 6.9e-26 23..286
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-341 MSGTGITKPNSNSLPSGYRFNEFEIQEAIGEGGFGIVYRAYDHQLERTIAIKEYMPTSLAKRNDDLSIGLRGERFGKTFQAGLNSFIQEARLLARFSHPGLLHVLRFWEENGTAYMGTQFYSGTTLKNLQAQQPEKINEAWIRRLLPPLFSAINTIHQEGYLHRDISLDNIQIQESQLPVLLDFGSARKEIGNLSDETEIMLKPGFAPIEQYTENSDGEQGPWTDIYALGAVLHTLIVGSPPPVSVVRSIEDSYQPLAERRPAGYSPELLRTVDRALALKPEDRPQTIDEMAELLHLPIADENEIISTPAAAPENLLVAANPAAAAAAAGAVTARGTQFSR
Transmembrane helix 342-364 PMMAGAGVAALLVIGAIAWLSGG
Inside 365-481 KDDAQAVAQNTVASPAQKTLTEQPSAPQTAQPAAAEPEKAAPPPQPVALVYFKLQPGEQVSLDGKPQQVTPGENGFASLNLAPGHYQLEIRHNDRLRRQQLSIDTAGTWLVNPATAG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9909 - -


  Protein sequence: 482 a.a.    

>T6CP259554 NZ_PQGJ01000003:c584469-583024 [Serratia marcescens] [PpkA]
MSGTGITKPNSNSLPSGYRFNEFEIQEAIGEGGFGIVYRAYDHQLERTIAIKEYMPTSLAKRNDDLSIGLRGERFGKTFQ
AGLNSFIQEARLLARFSHPGLLHVLRFWEENGTAYMGTQFYSGTTLKNLQAQQPEKINEAWIRRLLPPLFSAINTIHQEG
YLHRDISLDNIQIQESQLPVLLDFGSARKEIGNLSDETEIMLKPGFAPIEQYTENSDGEQGPWTDIYALGAVLHTLIVGS
PPPVSVVRSIEDSYQPLAERRPAGYSPELLRTVDRALALKPEDRPQTIDEMAELLHLPIADENEIISTPAAAPENLLVAA
NPAAAAAAAGAVTARGTQFSRPMMAGAGVAALLVIGAIAWLSGGKDDAQAVAQNTVASPAQKTLTEQPSAPQTAQPAAAE
PEKAAPPPQPVALVYFKLQPGEQVSLDGKPQQVTPGENGFASLNLAPGHYQLEIRHNDRLRRQQLSIDTAGTWLVNPATA
G*

  Nucleotide sequence: 1446 bp    

>T6CP259554 NZ_PQGJ01000003:c584469-583024 [Serratia marcescens] [PpkA]
ATGTCGGGAACCGGGATAACCAAACCGAATTCGAACAGCCTGCCGAGCGGCTATCGATTCAACGAATTCGAGATCCAGGA
AGCGATCGGCGAAGGCGGCTTCGGCATCGTCTACCGCGCCTACGATCACCAACTGGAACGCACCATCGCCATCAAGGAGT
ACATGCCGACCTCGCTGGCGAAACGCAACGACGATCTCAGCATCGGGCTGCGCGGCGAGCGCTTCGGCAAAACTTTCCAG
GCCGGGCTGAACAGCTTTATTCAGGAGGCGCGTCTGCTGGCGCGCTTCTCGCATCCCGGCCTGCTGCACGTATTGCGCTT
CTGGGAAGAGAACGGCACCGCCTATATGGGCACCCAGTTTTACAGCGGCACCACGCTGAAAAACCTGCAGGCGCAGCAGC
CGGAAAAAATCAACGAGGCGTGGATCCGTCGGCTGCTGCCGCCGCTGTTCAGCGCCATCAACACCATCCATCAGGAAGGT
TATCTGCACCGCGACATTTCGCTGGATAACATCCAGATCCAGGAGAGCCAGCTGCCGGTGCTGCTGGACTTCGGGTCAGC
GCGCAAAGAGATCGGCAACCTGTCGGACGAAACGGAGATCATGCTCAAACCGGGCTTCGCGCCGATCGAGCAGTACACCG
AGAACAGCGACGGCGAACAGGGGCCGTGGACCGATATCTACGCGCTGGGCGCCGTGCTGCACACGCTGATCGTCGGTTCG
CCGCCGCCGGTCAGCGTGGTGCGCAGCATCGAAGACAGCTACCAGCCGCTGGCCGAGCGCCGCCCCGCCGGCTACTCGCC
GGAGCTGTTGCGCACCGTCGATCGCGCGCTGGCGCTGAAGCCGGAAGACCGCCCGCAGACCATCGATGAAATGGCCGAGC
TGTTGCATCTGCCGATCGCCGATGAAAACGAAATCATCAGCACCCCGGCCGCCGCGCCGGAGAACTTGCTGGTCGCCGCC
AACCCGGCCGCCGCTGCGGCCGCCGCCGGCGCCGTTACCGCGCGCGGCACCCAATTCTCGCGCCCGATGATGGCCGGCGC
TGGCGTCGCCGCGCTGCTGGTGATCGGCGCGATCGCCTGGCTGAGCGGCGGCAAGGACGATGCCCAGGCCGTCGCCCAAA
ACACCGTGGCGTCACCGGCGCAGAAAACCCTGACGGAGCAGCCGAGCGCGCCGCAAACCGCGCAGCCTGCCGCGGCGGAA
CCTGAAAAAGCGGCGCCGCCACCGCAGCCGGTGGCGCTGGTGTACTTCAAACTGCAGCCGGGCGAACAGGTCAGCCTCGA
CGGCAAGCCGCAGCAGGTGACGCCGGGCGAAAACGGCTTCGCCAGCCTGAACCTGGCGCCGGGCCATTATCAGTTGGAGA
TCCGCCACAACGATCGGTTGCGCCGCCAGCAGCTCAGCATCGACACCGCCGGCACCTGGCTGGTCAACCCGGCCACCGCA
GGTTAA