Detailed information of component protein


Summary

Component ID T6CP259553
Component protein type TssI
T6SS ID (Type) T6SS17505 experimental (Type i3)
Strain Serratia marcescens strain KZ11
Replicon chromosome
Sequence Protein sequence (643 a.a.); Nucleotide sequence (1929 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) C3R39_RS13885
Coordinate (Strand) 580953..582881 (-)
NCBI ID WP_103687224.1
RefSeq NZ_PQGJ01000003
Uniprot ID UPI000CDAC092
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.7e-90 25..330
Phage_base_V PF04717.14 2.5e-14 385..452
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-642 MLDRIIAHTPLGQEQLLFRSLDGIEALSTPFDFSIELLSTDARLDRKALLGQPLTLEIPTQGFLSAPRYLNGKITAIAVSSEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLAEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRLMEQEGIYYYFKHEMGKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDRVTPGIYSLDDYDFRKPNAWLFQARQNPVSPTPGQIDVYDWPGRYTEHQQGEFYARVRQEAWQAEHQQIRGTATALGIAPGSTFTLYNAPHADDNREYLTLQANYHLKENRYASGDDQSSEHRIDFTVLPADVPWHPPQQAIWPKTHGPQTARVVGPAGESIWTDKYGRIKVKFHWDRFGPKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFMSRTKDGTADNANALRFEDKAGAEQVWIQAERNMDTQVKNDESHTIANDHTHLVGGNQIKRVVLNQATGVKGESSALTGKTRSDAVVNAFTLGSGESLRLECGESVIELLANGQINITGTSFNITVKEDGAINTGGQLDLNQPGGAARTAAPGGGHQAAIQSAVDQLFPKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9936 - -


  Protein sequence: 643 a.a.    

>T6CP259553 NZ_PQGJ01000003:c582881-580953 [Serratia marcescens] [TssI]
MLDRIIAHTPLGQEQLLFRSLDGIEALSTPFDFSIELLSTDARLDRKALLGQPLTLEIPTQGFLSAPRYLNGKITAIAVS
SEEIGGTRYAVYNLHVQPDLWPMTKDRNFRIFQEQTVPQIVKTLLAEHNVQLEDQLTGDYRLWGYCVQYNESSFNFISRL
MEQEGIYYYFKHEMGKHTLVLGDAPHHHQPYPGYEMIPYHLTPSGGSTSEEGISQWTLSDRVTPGIYSLDDYDFRKPNAW
LFQARQNPVSPTPGQIDVYDWPGRYTEHQQGEFYARVRQEAWQAEHQQIRGTATALGIAPGSTFTLYNAPHADDNREYLT
LQANYHLKENRYASGDDQSSEHRIDFTVLPADVPWHPPQQAIWPKTHGPQTARVVGPAGESIWTDKYGRIKVKFHWDRFG
PKDDGSSCWVRVSSAWAGQGYGGVQIPRVNDEVVVDFINGDPDRPIVTGRVYNEASMPPWALPAAATQMGFMSRTKDGTA
DNANALRFEDKAGAEQVWIQAERNMDTQVKNDESHTIANDHTHLVGGNQIKRVVLNQATGVKGESSALTGKTRSDAVVNA
FTLGSGESLRLECGESVIELLANGQINITGTSFNITVKEDGAINTGGQLDLNQPGGAARTAAPGGGHQAAIQSAVDQLFP
KE*

  Nucleotide sequence: 1929 bp    

>T6CP259553 NZ_PQGJ01000003:c582881-580953 [Serratia marcescens] [TssI]
ATGTTGGATCGCATTATTGCGCACACGCCGCTGGGCCAGGAGCAACTGCTGTTCCGCTCGCTGGACGGCATCGAAGCGCT
TTCCACTCCTTTCGACTTCTCTATTGAATTGCTGAGCACCGACGCGCGGCTCGATCGCAAAGCGCTGCTCGGCCAACCGC
TGACGCTGGAGATCCCGACCCAGGGCTTTCTCAGCGCCCCGCGCTACCTGAACGGCAAGATCACCGCCATCGCCGTCAGC
AGCGAAGAGATCGGCGGCACGCGCTACGCGGTGTATAACCTGCACGTGCAGCCGGATCTGTGGCCGATGACCAAAGACCG
CAACTTCCGCATCTTCCAGGAACAGACGGTTCCGCAGATCGTCAAGACCCTGCTGGCGGAGCACAACGTGCAGCTGGAAG
ATCAGCTGACCGGCGACTATCGCCTGTGGGGCTACTGCGTGCAGTACAACGAAAGCAGCTTCAACTTCATCAGCCGCCTG
ATGGAGCAGGAGGGCATCTATTACTATTTCAAACACGAGATGGGCAAACACACGCTGGTGCTCGGGGATGCGCCCCACCA
CCACCAGCCCTATCCCGGCTACGAGATGATCCCCTACCACCTGACGCCGTCCGGCGGCAGCACCAGCGAGGAAGGCATCA
GCCAGTGGACGTTGTCCGATCGCGTCACGCCGGGCATCTACAGCCTGGACGACTACGATTTTCGCAAACCAAACGCCTGG
CTGTTCCAGGCGCGGCAAAATCCGGTTTCGCCGACGCCGGGGCAGATCGACGTTTACGACTGGCCAGGCCGCTACACCGA
GCATCAGCAGGGGGAGTTCTACGCCCGCGTGCGCCAGGAGGCCTGGCAGGCCGAGCATCAGCAGATCCGCGGTACCGCCA
CCGCGTTGGGCATCGCTCCCGGCAGCACCTTTACGTTGTATAACGCCCCGCACGCCGACGACAATCGCGAATATCTGACG
CTGCAGGCCAACTACCATCTGAAAGAGAACCGCTACGCCAGCGGCGACGATCAGAGCAGTGAACACCGCATTGACTTCAC
CGTGCTGCCGGCGGACGTGCCCTGGCACCCGCCGCAGCAGGCCATCTGGCCGAAAACCCACGGGCCGCAGACCGCCCGGG
TGGTCGGCCCGGCCGGCGAATCGATTTGGACCGACAAATACGGCCGCATCAAGGTGAAATTCCACTGGGATCGCTTCGGG
CCAAAAGACGACGGCAGCTCCTGCTGGGTGCGCGTCTCCAGCGCCTGGGCCGGCCAGGGCTACGGCGGCGTGCAGATCCC
GCGCGTCAACGACGAAGTGGTGGTGGACTTTATCAACGGCGATCCGGATCGGCCGATCGTCACCGGGCGCGTCTATAACG
AAGCCAGCATGCCGCCCTGGGCGCTGCCGGCCGCCGCTACCCAGATGGGCTTTATGAGCCGCACCAAGGACGGCACCGCC
GACAACGCCAACGCCCTGCGCTTCGAAGACAAGGCCGGCGCCGAACAGGTGTGGATCCAGGCGGAACGCAACATGGACAC
CCAGGTGAAAAACGATGAGAGCCACACCATCGCTAACGACCACACCCACCTGGTGGGCGGTAACCAGATCAAACGGGTAG
TGCTCAATCAGGCGACCGGTGTCAAAGGTGAATCCTCCGCGCTGACCGGCAAAACGCGCAGCGACGCCGTAGTCAACGCC
TTTACCCTCGGCTCCGGCGAATCGCTGCGGCTCGAATGCGGCGAAAGCGTGATCGAACTGCTGGCGAACGGCCAAATCAA
CATCACCGGCACCAGTTTCAATATCACGGTGAAAGAGGATGGCGCGATCAATACCGGCGGCCAGCTGGATCTCAACCAGC
CCGGCGGCGCCGCACGCACCGCCGCACCAGGCGGCGGCCATCAGGCGGCGATCCAGAGCGCCGTCGATCAGCTGTTCCCT
AAAGAGTAG