Detailed information of component protein
Summary
| Component ID | T6CP259536 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS17503  (Type i1) |
| Strain | Aeromonas hydrophila strain NF1 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BE47_RS0109360 |
| Coordinate (Strand) | 79971..80489 (-) |
| NCBI ID | WP_010634822.1 |
| RefSeq | NZ_JDWB01000021 |
| Uniprot ID | A0A2H9U664_9GAMM, A0A1E4X6L5_9GAMM, A0A2R4TWW1_AERHY, A0A433G6Q1_9GAMM, A0A261E6Q7_9GAMM, Q0PZH6_AERHY, A0A3A9IH47_9GAMM, A0A448KZH2_9GAMM |
| KEGG ID | ahi:VU14_13095, ahh:RY45_19895, ael:NCTC12917_03267, aaj:BOQ57_08965, ahh:RY45_09925, ahi:VU14_15950 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 7.9e-32 | 7..155 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MPTPCYISIEGKTQGNITAGAFTSDSVGNIFVQGHEDEMLVQEFQHVVTVPTDPQSGQPAGQRVHKPFKFTVALNKAVPLMYNSLASGEMLPKVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCQMPHCQDPAKSDFTQLIQVSLAYRKIDWEHTVAGTSGADDWRAPIEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9760 | - | - |
Protein sequence: 173 a.a.
>T6CP259536 NZ_JDWB01000021:c80489-79971 [Aeromonas hydrophila] [TssD]
MPTPCYISIEGKTQGNITAGAFTSDSVGNIFVQGHEDEMLVQEFQHVVTVPTDPQSGQPAGQRVHKPFKFTVALNKAVPL
MYNSLASGEMLPKVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCQMPHCQDPAKSDFTQLIQVSLAYRKIDWEHTVAGT
SGADDWRAPIEA*
MPTPCYISIEGKTQGNITAGAFTSDSVGNIFVQGHEDEMLVQEFQHVVTVPTDPQSGQPAGQRVHKPFKFTVALNKAVPL
MYNSLASGEMLPKVTLKWYRTSVEGKQEHFFSTVLTDATIVDIDCQMPHCQDPAKSDFTQLIQVSLAYRKIDWEHTVAGT
SGADDWRAPIEA*
Nucleotide sequence: 519 bp
>T6CP259536 NZ_JDWB01000021:c80489-79971 [Aeromonas hydrophila] [TssD]
ATGCCAACTCCATGTTATATCAGCATCGAAGGTAAAACCCAGGGCAACATCACCGCCGGTGCCTTCACTTCCGATTCCGT
CGGCAACATCTTCGTGCAGGGCCACGAAGACGAGATGCTGGTACAAGAGTTCCAGCACGTCGTGACCGTACCGACTGACC
CGCAATCTGGTCAGCCTGCTGGTCAGCGTGTCCACAAGCCGTTCAAGTTCACCGTTGCGCTGAACAAAGCCGTGCCGCTG
ATGTACAACTCCCTGGCCTCCGGCGAAATGCTGCCGAAAGTGACCCTGAAGTGGTACCGCACCTCTGTCGAGGGCAAGCA
GGAACACTTTTTCTCTACCGTGCTGACCGATGCCACCATCGTTGACATCGACTGCCAGATGCCGCACTGCCAGGATCCGG
CGAAGTCTGACTTCACCCAGCTGATCCAGGTCTCTCTGGCCTACCGCAAAATCGATTGGGAACACACCGTTGCCGGCACT
TCCGGTGCGGACGACTGGCGTGCGCCGATCGAGGCGTAA
ATGCCAACTCCATGTTATATCAGCATCGAAGGTAAAACCCAGGGCAACATCACCGCCGGTGCCTTCACTTCCGATTCCGT
CGGCAACATCTTCGTGCAGGGCCACGAAGACGAGATGCTGGTACAAGAGTTCCAGCACGTCGTGACCGTACCGACTGACC
CGCAATCTGGTCAGCCTGCTGGTCAGCGTGTCCACAAGCCGTTCAAGTTCACCGTTGCGCTGAACAAAGCCGTGCCGCTG
ATGTACAACTCCCTGGCCTCCGGCGAAATGCTGCCGAAAGTGACCCTGAAGTGGTACCGCACCTCTGTCGAGGGCAAGCA
GGAACACTTTTTCTCTACCGTGCTGACCGATGCCACCATCGTTGACATCGACTGCCAGATGCCGCACTGCCAGGATCCGG
CGAAGTCTGACTTCACCCAGCTGATCCAGGTCTCTCTGGCCTACCGCAAAATCGATTGGGAACACACCGTTGCCGGCACT
TCCGGTGCGGACGACTGGCGTGCGCCGATCGAGGCGTAA