Detailed information of component protein


Summary

Component ID T6CP259535
Component protein type TssB
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BE47_RS0109345
Coordinate (Strand) 73903..74406 (-)
NCBI ID WP_029301188.1
RefSeq NZ_JDWB01000021
Uniprot ID UPI000492F4EB
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2.8e-55 10..160

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-167 MGKGIDGGTVAPKERINIKYVPATGGQQAEIELPLTMMVVGNMKGRTEDTPIEERQTVSIDKNNFSSVMKESALELKFSVSNRLEENSQDELPVSIKIQSLEDFTPDSVAQQVPELRKLLELREALVALKGPLGNIPAFRNRLQDLLSSDDAREQLLKELDLIKPAE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9861 - -



  Protein sequence: 168 a.a.    

>T6CP259535 NZ_JDWB01000021:c74406-73903 [Aeromonas hydrophila] [TssB]
MGKGIDGGTVAPKERINIKYVPATGGQQAEIELPLTMMVVGNMKGRTEDTPIEERQTVSIDKNNFSSVMKESALELKFSV
SNRLEENSQDELPVSIKIQSLEDFTPDSVAQQVPELRKLLELREALVALKGPLGNIPAFRNRLQDLLSSDDAREQLLKEL
DLIKPAE*

  Nucleotide sequence: 504 bp    

>T6CP259535 NZ_JDWB01000021:c74406-73903 [Aeromonas hydrophila] [TssB]
ATGGGAAAAGGAATTGACGGCGGCACTGTTGCGCCCAAAGAACGTATCAACATCAAATATGTACCGGCAACCGGTGGTCA
GCAGGCGGAAATAGAGCTTCCGTTGACCATGATGGTGGTCGGCAATATGAAGGGCCGTACTGAAGACACTCCGATCGAGG
AGCGTCAGACCGTATCTATCGACAAGAATAACTTCTCGTCTGTCATGAAAGAATCCGCGCTGGAACTGAAGTTTTCCGTT
TCCAATCGTCTGGAAGAGAATAGCCAGGATGAGCTGCCGGTTTCGATCAAGATCCAGTCTCTGGAAGACTTCACCCCTGA
CAGCGTGGCACAGCAAGTGCCCGAGCTGCGCAAGCTGCTGGAACTGCGTGAGGCCTTGGTTGCCCTGAAGGGGCCACTGG
GCAATATCCCTGCCTTCCGCAATCGTTTGCAAGATCTGCTGTCCAGTGATGACGCTCGTGAGCAGCTGCTCAAGGAGCTG
GATTTGATTAAGCCTGCCGAGTGA