Detailed information of component protein
Summary
| Component ID | T6CP259535 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS17503  (Type i1) |
| Strain | Aeromonas hydrophila strain NF1 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BE47_RS0109345 |
| Coordinate (Strand) | 73903..74406 (-) |
| NCBI ID | WP_029301188.1 |
| RefSeq | NZ_JDWB01000021 |
| Uniprot ID | UPI000492F4EB |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 2.8e-55 | 10..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-167 | MGKGIDGGTVAPKERINIKYVPATGGQQAEIELPLTMMVVGNMKGRTEDTPIEERQTVSIDKNNFSSVMKESALELKFSVSNRLEENSQDELPVSIKIQSLEDFTPDSVAQQVPELRKLLELREALVALKGPLGNIPAFRNRLQDLLSSDDAREQLLKELDLIKPAE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9861 | - | - |
Protein sequence: 168 a.a.
>T6CP259535 NZ_JDWB01000021:c74406-73903 [Aeromonas hydrophila] [TssB]
MGKGIDGGTVAPKERINIKYVPATGGQQAEIELPLTMMVVGNMKGRTEDTPIEERQTVSIDKNNFSSVMKESALELKFSV
SNRLEENSQDELPVSIKIQSLEDFTPDSVAQQVPELRKLLELREALVALKGPLGNIPAFRNRLQDLLSSDDAREQLLKEL
DLIKPAE*
MGKGIDGGTVAPKERINIKYVPATGGQQAEIELPLTMMVVGNMKGRTEDTPIEERQTVSIDKNNFSSVMKESALELKFSV
SNRLEENSQDELPVSIKIQSLEDFTPDSVAQQVPELRKLLELREALVALKGPLGNIPAFRNRLQDLLSSDDAREQLLKEL
DLIKPAE*
Nucleotide sequence: 504 bp
>T6CP259535 NZ_JDWB01000021:c74406-73903 [Aeromonas hydrophila] [TssB]
ATGGGAAAAGGAATTGACGGCGGCACTGTTGCGCCCAAAGAACGTATCAACATCAAATATGTACCGGCAACCGGTGGTCA
GCAGGCGGAAATAGAGCTTCCGTTGACCATGATGGTGGTCGGCAATATGAAGGGCCGTACTGAAGACACTCCGATCGAGG
AGCGTCAGACCGTATCTATCGACAAGAATAACTTCTCGTCTGTCATGAAAGAATCCGCGCTGGAACTGAAGTTTTCCGTT
TCCAATCGTCTGGAAGAGAATAGCCAGGATGAGCTGCCGGTTTCGATCAAGATCCAGTCTCTGGAAGACTTCACCCCTGA
CAGCGTGGCACAGCAAGTGCCCGAGCTGCGCAAGCTGCTGGAACTGCGTGAGGCCTTGGTTGCCCTGAAGGGGCCACTGG
GCAATATCCCTGCCTTCCGCAATCGTTTGCAAGATCTGCTGTCCAGTGATGACGCTCGTGAGCAGCTGCTCAAGGAGCTG
GATTTGATTAAGCCTGCCGAGTGA
ATGGGAAAAGGAATTGACGGCGGCACTGTTGCGCCCAAAGAACGTATCAACATCAAATATGTACCGGCAACCGGTGGTCA
GCAGGCGGAAATAGAGCTTCCGTTGACCATGATGGTGGTCGGCAATATGAAGGGCCGTACTGAAGACACTCCGATCGAGG
AGCGTCAGACCGTATCTATCGACAAGAATAACTTCTCGTCTGTCATGAAAGAATCCGCGCTGGAACTGAAGTTTTCCGTT
TCCAATCGTCTGGAAGAGAATAGCCAGGATGAGCTGCCGGTTTCGATCAAGATCCAGTCTCTGGAAGACTTCACCCCTGA
CAGCGTGGCACAGCAAGTGCCCGAGCTGCGCAAGCTGCTGGAACTGCGTGAGGCCTTGGTTGCCCTGAAGGGGCCACTGG
GCAATATCCCTGCCTTCCGCAATCGTTTGCAAGATCTGCTGTCCAGTGATGACGCTCGTGAGCAGCTGCTCAAGGAGCTG
GATTTGATTAAGCCTGCCGAGTGA