Detailed information of component protein
Summary
Component ID | T6CP259534 |
Component protein type | TssC |
T6SS ID (Type) | T6SS17503 (Type i1) |
Strain | Aeromonas hydrophila strain NF1 |
Replicon | chromosome |
Sequence | Protein sequence (493 a.a.); Nucleotide sequence (1479 bp) |
Reference |
External database links
Locus tag (Gene) | BE47_RS0109340 |
Coordinate (Strand) | 72386..73864 (-) |
NCBI ID | WP_005299978.1 |
RefSeq | NZ_JDWB01000021 |
Uniprot ID | A0A3Q8DPU1_9GAMM, K1JBN3_9GAMM, A0A7U5VSP3_AERHY |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 4.4e-128 | 66..365 |
VipB_2 | PF18945.2 | 4.6e-45 | 378..489 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-492 | MSLVEEQVQAGASAASSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQMDVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPVGAVIGDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDARYLGLTAPRFLARLPYDPTENPIKGFNYQEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMGQLQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGASFELSLVGRLDKE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9572 | - | - |
Protein sequence: 493 a.a.
>T6CP259534 NZ_JDWB01000021:c73864-72386 [Aeromonas hydrophila] [TssC]
MSLVEEQVQAGASAASSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQM
DVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPVGAVI
GDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDARYLGLTA
PRFLARLPYDPTENPIKGFNYQEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMGQ
LQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGAS
FELSLVGRLDKE*
MSLVEEQVQAGASAASSSLLDEIMAQARITPVDEGYSVAKQGVAALIANILDSGTTSEPVNKALVDSMIVELDKKLSKQM
DVILHAKELQEMESSWRSLKLLVDRTDFRENIKIQVLHATKEELLEDFEFSPEITQSGLYKHVYSTGYGQFGGQPVGAVI
GDYAFTHSSPDIKLMQYVSAVGAMAHAPFISSVAPAFFGVDSFTDLPSIKDLKSVFEGPAYTKWRSLRESEDARYLGLTA
PRFLARLPYDPTENPIKGFNYQEDISSDHDHYLWGNTAYLMGTSLTDSFAKYRWCPNIIGPQSGGAIHDLPVHVYEAMGQ
LQAKIPTEVLITDRREYELSEEGFITLTMRKDSDNAAFFSANSVQKPKVFPNTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNGWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVAMAVRPHFKYMGAS
FELSLVGRLDKE*
Nucleotide sequence: 1479 bp
>T6CP259534 NZ_JDWB01000021:c73864-72386 [Aeromonas hydrophila] [TssC]
ATGTCTTTGGTCGAAGAACAGGTTCAAGCGGGGGCGAGTGCCGCCTCCTCGTCCTTGCTGGACGAAATCATGGCGCAGGC
TCGTATTACCCCGGTGGATGAAGGTTACAGCGTTGCCAAGCAGGGGGTTGCAGCCCTGATCGCCAACATTCTGGACAGCG
GTACCACCAGCGAGCCAGTCAACAAGGCGCTGGTGGACAGCATGATTGTCGAGCTCGACAAGAAGCTCAGCAAGCAGATG
GACGTCATCCTGCACGCCAAAGAGCTGCAGGAGATGGAGTCCTCCTGGCGTTCCCTGAAGCTCTTGGTGGATCGCACCGA
TTTTCGCGAGAACATCAAGATCCAGGTGCTGCATGCCACCAAGGAAGAGCTGCTGGAAGATTTTGAGTTCTCACCCGAAA
TCACCCAGTCCGGTCTCTACAAGCATGTCTACTCGACTGGCTACGGTCAGTTCGGTGGCCAGCCCGTCGGCGCTGTGATC
GGTGATTACGCCTTTACCCACAGCTCACCGGACATCAAGCTGATGCAATACGTCAGTGCGGTGGGTGCCATGGCCCATGC
GCCGTTCATTTCTTCCGTCGCACCAGCCTTCTTCGGCGTCGACAGCTTTACCGATCTGCCTTCCATCAAGGATCTGAAAT
CGGTATTCGAAGGGCCGGCCTACACCAAGTGGCGTTCCCTGCGTGAATCGGAAGATGCCCGTTATCTGGGACTGACCGCA
CCGCGCTTCCTGGCGCGTCTGCCCTACGACCCGACCGAAAACCCCATCAAGGGTTTCAACTATCAGGAAGATATCAGCTC
GGATCACGACCACTATCTGTGGGGCAACACCGCCTACCTGATGGGTACTTCCCTGACCGACAGTTTCGCCAAGTATCGTT
GGTGCCCGAACATCATAGGCCCGCAGAGCGGTGGTGCCATCCACGACCTGCCGGTGCACGTCTACGAGGCCATGGGTCAG
CTGCAGGCGAAGATCCCGACCGAGGTGCTGATCACCGACCGTCGCGAATACGAGCTGTCGGAAGAGGGCTTCATCACCCT
GACCATGCGCAAGGACAGCGACAACGCCGCCTTCTTCTCCGCCAACTCGGTGCAAAAACCCAAGGTGTTCCCGAACACCA
AGGAAGGCAAAGAAGCGGAAACCAACTACAAGCTGGGTACCCAGCTGCCCTACATGTTCATCATCAACCGCCTGGCGCAC
TACATCAAAGTGCTGCAGCGCGAGCAGATCGGTTCCTGGAAGGAGCGTCAGGATCTGGAACGCGAGCTGAATGGCTGGAT
CAAGCAGTACGTTGCCGATCAGGAGAACCCGCCGGCAGACGTACGTAGCCGTCGTCCGCTGCGCGCCGCGCAGATCAAGG
TGCTGGATGTGGAAGGGGAGCCGGGCTGGTACCAGGTTGCCATGGCCGTGCGCCCGCACTTCAAGTACATGGGGGCGAGC
TTCGAGCTCTCTCTGGTAGGTCGACTGGACAAGGAATAA
ATGTCTTTGGTCGAAGAACAGGTTCAAGCGGGGGCGAGTGCCGCCTCCTCGTCCTTGCTGGACGAAATCATGGCGCAGGC
TCGTATTACCCCGGTGGATGAAGGTTACAGCGTTGCCAAGCAGGGGGTTGCAGCCCTGATCGCCAACATTCTGGACAGCG
GTACCACCAGCGAGCCAGTCAACAAGGCGCTGGTGGACAGCATGATTGTCGAGCTCGACAAGAAGCTCAGCAAGCAGATG
GACGTCATCCTGCACGCCAAAGAGCTGCAGGAGATGGAGTCCTCCTGGCGTTCCCTGAAGCTCTTGGTGGATCGCACCGA
TTTTCGCGAGAACATCAAGATCCAGGTGCTGCATGCCACCAAGGAAGAGCTGCTGGAAGATTTTGAGTTCTCACCCGAAA
TCACCCAGTCCGGTCTCTACAAGCATGTCTACTCGACTGGCTACGGTCAGTTCGGTGGCCAGCCCGTCGGCGCTGTGATC
GGTGATTACGCCTTTACCCACAGCTCACCGGACATCAAGCTGATGCAATACGTCAGTGCGGTGGGTGCCATGGCCCATGC
GCCGTTCATTTCTTCCGTCGCACCAGCCTTCTTCGGCGTCGACAGCTTTACCGATCTGCCTTCCATCAAGGATCTGAAAT
CGGTATTCGAAGGGCCGGCCTACACCAAGTGGCGTTCCCTGCGTGAATCGGAAGATGCCCGTTATCTGGGACTGACCGCA
CCGCGCTTCCTGGCGCGTCTGCCCTACGACCCGACCGAAAACCCCATCAAGGGTTTCAACTATCAGGAAGATATCAGCTC
GGATCACGACCACTATCTGTGGGGCAACACCGCCTACCTGATGGGTACTTCCCTGACCGACAGTTTCGCCAAGTATCGTT
GGTGCCCGAACATCATAGGCCCGCAGAGCGGTGGTGCCATCCACGACCTGCCGGTGCACGTCTACGAGGCCATGGGTCAG
CTGCAGGCGAAGATCCCGACCGAGGTGCTGATCACCGACCGTCGCGAATACGAGCTGTCGGAAGAGGGCTTCATCACCCT
GACCATGCGCAAGGACAGCGACAACGCCGCCTTCTTCTCCGCCAACTCGGTGCAAAAACCCAAGGTGTTCCCGAACACCA
AGGAAGGCAAAGAAGCGGAAACCAACTACAAGCTGGGTACCCAGCTGCCCTACATGTTCATCATCAACCGCCTGGCGCAC
TACATCAAAGTGCTGCAGCGCGAGCAGATCGGTTCCTGGAAGGAGCGTCAGGATCTGGAACGCGAGCTGAATGGCTGGAT
CAAGCAGTACGTTGCCGATCAGGAGAACCCGCCGGCAGACGTACGTAGCCGTCGTCCGCTGCGCGCCGCGCAGATCAAGG
TGCTGGATGTGGAAGGGGAGCCGGGCTGGTACCAGGTTGCCATGGCCGTGCGCCCGCACTTCAAGTACATGGGGGCGAGC
TTCGAGCTCTCTCTGGTAGGTCGACTGGACAAGGAATAA