Detailed information of component protein
Summary
| Component ID | T6CP259533 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS17503  (Type i1) |
| Strain | Aeromonas hydrophila strain NF1 |
| Replicon | chromosome |
| Sequence | Protein sequence (144 a.a.); Nucleotide sequence (432 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BE47_RS0109335 |
| Coordinate (Strand) | 71948..72379 (-) |
| NCBI ID | WP_029301187.1 |
| RefSeq | NZ_JDWB01000021 |
| Uniprot ID | UPI0004937721 |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 7.7e-19 | 34..121 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-143 | MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIREAIRQCIRRYEPRIIHVDVRSPDYQSSPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9787 | - | - |
Protein sequence: 144 a.a.
>T6CP259533 NZ_JDWB01000021:c72379-71948 [Aeromonas hydrophila] [TssE]
MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIR
EAIRQCIRRYEPRIIHVDVRSPDYQSSPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV*
MPHLSSWDRGNAASLFDRIRGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCRSAPDLGVIDLNDATQGSADIKGRIR
EAIRQCIRRYEPRIIHVDVRSPDYQSSPLEMSFQVTAHVRLEHIEQVTSFNVHMDSHRHYRMV*
Nucleotide sequence: 432 bp
>T6CP259533 NZ_JDWB01000021:c72379-71948 [Aeromonas hydrophila] [TssE]
ATGCCGCATCTCTCTTCCTGGGATAGAGGAAATGCGGCCAGCCTGTTTGATCGCATCCGGGGGGAGGGGCTTGGCTCCTC
CCCTCGTTCGGAAGTTGATGAACTGGTCGACTCTGTCAAACGGCAGCTCGACCAGATCCTCAACACCCGTCCCGGCAATT
GCCGCAGTGCACCCGATCTGGGGGTCATTGATCTCAATGATGCCACTCAGGGCAGTGCGGATATCAAGGGGCGGATCCGG
GAGGCGATCCGGCAATGCATCCGTCGTTATGAACCACGGATCATCCATGTGGATGTTCGTTCACCCGACTATCAATCGAG
CCCGCTCGAGATGTCGTTTCAGGTGACGGCCCACGTGCGGCTGGAGCATATCGAGCAAGTTACCTCGTTCAACGTCCATA
TGGACAGTCACCGTCACTACCGCATGGTCTGA
ATGCCGCATCTCTCTTCCTGGGATAGAGGAAATGCGGCCAGCCTGTTTGATCGCATCCGGGGGGAGGGGCTTGGCTCCTC
CCCTCGTTCGGAAGTTGATGAACTGGTCGACTCTGTCAAACGGCAGCTCGACCAGATCCTCAACACCCGTCCCGGCAATT
GCCGCAGTGCACCCGATCTGGGGGTCATTGATCTCAATGATGCCACTCAGGGCAGTGCGGATATCAAGGGGCGGATCCGG
GAGGCGATCCGGCAATGCATCCGTCGTTATGAACCACGGATCATCCATGTGGATGTTCGTTCACCCGACTATCAATCGAG
CCCGCTCGAGATGTCGTTTCAGGTGACGGCCCACGTGCGGCTGGAGCATATCGAGCAAGTTACCTCGTTCAACGTCCATA
TGGACAGTCACCGTCACTACCGCATGGTCTGA