Detailed information of component protein


Summary

Component ID T6CP259532
Component protein type TssF
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (589 a.a.); Nucleotide sequence (1767 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109330
Coordinate (Strand) 70178..71944 (-)
NCBI ID WP_029301186.1
RefSeq NZ_JDWB01000021
Uniprot ID UPI0004931CF2
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 7.1e-154 3..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-588 MSLEHYFRDELAFLRLQGREFADAYPELTRFLSEQNTDPDVERLLEGFAFLTGNLRAKIEDEFPELTHGLLNMLWPNYLRPVPSMTIMQFAVIPGAIAQPALVKQGCQLDSLPLDEVTCHFQTCHDTWVYPADIRHIAAQSGNDLSTISLDIVLHAPLPLSELQLDKLRFFLGGDSYTAYELYFWLSNQLSHIELEIDGKRFRQEAKALKSVGFERDDALLPYPNNVYSGYRILQEYFCFPESFLFFELSGGEWPKQPLPVSEFKVHFCFDRPLPAELKIRPDSFMLNCVPAINLFQHDSEPVNLNGRQAEYPLKASYRHADSFEIFSVDQVEGWVEGNLGRSRGTPRIYQPFESFQHQIERAKQRLALYYRVRVKEAVSGDGFEHSLSFVRGDETTTVELDESISVTLTCTNRSRAARLKVGSVCVPTGSSPSFATFRNLIRPTRPLRPALDGSLHWTLISNLSLNYVSLLRRDALVQVLRTYDFPALHDKQAEQASRKRLAGIEEIETKPVDRLVRGMPVRGLKSVLSIRQSAFGSEGELYLFSTVLAHFFSLYASVNAFHLLEVVNLDNKERYQWPVQIGQHSLM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9914 - -


  Protein sequence: 589 a.a.    

>T6CP259532 NZ_JDWB01000021:c71944-70178 [Aeromonas hydrophila] [TssF]
MSLEHYFRDELAFLRLQGREFADAYPELTRFLSEQNTDPDVERLLEGFAFLTGNLRAKIEDEFPELTHGLLNMLWPNYLR
PVPSMTIMQFAVIPGAIAQPALVKQGCQLDSLPLDEVTCHFQTCHDTWVYPADIRHIAAQSGNDLSTISLDIVLHAPLPL
SELQLDKLRFFLGGDSYTAYELYFWLSNQLSHIELEIDGKRFRQEAKALKSVGFERDDALLPYPNNVYSGYRILQEYFCF
PESFLFFELSGGEWPKQPLPVSEFKVHFCFDRPLPAELKIRPDSFMLNCVPAINLFQHDSEPVNLNGRQAEYPLKASYRH
ADSFEIFSVDQVEGWVEGNLGRSRGTPRIYQPFESFQHQIERAKQRLALYYRVRVKEAVSGDGFEHSLSFVRGDETTTVE
LDESISVTLTCTNRSRAARLKVGSVCVPTGSSPSFATFRNLIRPTRPLRPALDGSLHWTLISNLSLNYVSLLRRDALVQV
LRTYDFPALHDKQAEQASRKRLAGIEEIETKPVDRLVRGMPVRGLKSVLSIRQSAFGSEGELYLFSTVLAHFFSLYASVN
AFHLLEVVNLDNKERYQWPVQIGQHSLM*

  Nucleotide sequence: 1767 bp    

>T6CP259532 NZ_JDWB01000021:c71944-70178 [Aeromonas hydrophila] [TssF]
ATGTCGCTGGAACATTACTTCAGGGATGAACTGGCATTTTTGCGCCTGCAAGGGCGCGAATTTGCCGACGCCTATCCCGA
GCTCACCCGCTTTCTGTCGGAGCAGAATACCGATCCGGACGTGGAGCGCCTGCTGGAGGGGTTCGCCTTCCTCACGGGCA
ACCTGCGCGCCAAGATTGAGGATGAGTTTCCCGAGCTGACCCACGGTCTGCTCAACATGCTCTGGCCCAACTACCTGCGT
CCCGTGCCCAGCATGACCATCATGCAGTTTGCGGTCATTCCGGGCGCCATCGCCCAGCCGGCGCTGGTCAAGCAAGGCTG
CCAGCTCGACAGTCTGCCCCTGGACGAGGTGACCTGTCATTTCCAGACCTGTCACGATACCTGGGTCTATCCGGCCGATA
TCCGTCATATCGCGGCCCAGAGCGGCAACGATCTCTCTACCATTTCGCTGGATATCGTCCTGCATGCTCCCTTGCCGCTG
AGCGAGTTGCAGCTGGACAAGCTGCGCTTCTTCCTTGGTGGTGACAGCTACACCGCTTATGAGCTTTACTTCTGGCTCTC
CAACCAGCTCTCCCATATCGAGCTGGAGATCGACGGCAAGCGCTTTCGCCAGGAGGCCAAAGCCCTCAAGTCGGTCGGCT
TCGAGCGCGATGACGCGCTCTTGCCCTATCCGAACAACGTCTATTCCGGCTACCGGATCCTGCAGGAGTACTTCTGCTTC
CCGGAAAGCTTCCTCTTCTTCGAACTCTCCGGTGGCGAGTGGCCCAAACAGCCGCTGCCGGTGAGCGAATTCAAGGTGCA
CTTCTGCTTCGACCGGCCACTGCCGGCGGAGCTCAAGATCCGTCCCGACTCCTTCATGCTCAACTGCGTGCCGGCCATCA
ACCTGTTCCAGCACGACAGTGAGCCGGTCAACCTCAATGGCCGTCAGGCGGAGTATCCCCTCAAGGCGAGCTATCGCCAT
GCCGACAGCTTCGAGATCTTCTCGGTGGATCAGGTGGAGGGCTGGGTCGAGGGGAACCTCGGCCGCTCGCGCGGTACGCC
GCGCATCTATCAGCCATTCGAGAGCTTCCAGCACCAGATCGAGCGGGCCAAGCAGCGGCTGGCGCTCTACTACCGGGTGC
GGGTCAAGGAGGCGGTGAGCGGGGATGGTTTCGAACACAGCCTCTCGTTCGTGCGTGGGGATGAAACCACCACGGTCGAA
CTGGATGAATCCATCTCGGTGACGCTCACCTGCACCAACCGCTCCCGCGCCGCCCGTCTCAAGGTGGGCAGCGTCTGCGT
GCCGACCGGCAGCTCGCCCTCGTTTGCCACCTTCCGCAACCTGATCCGGCCGACCCGGCCGCTGCGCCCGGCGCTGGACG
GCAGTCTGCACTGGACGCTGATATCCAACCTGTCGCTCAACTATGTCTCCCTGCTGCGCCGCGATGCCCTGGTGCAGGTG
CTGCGCACCTACGATTTTCCGGCGCTGCACGACAAGCAGGCCGAGCAGGCCTCGCGCAAGCGGCTGGCGGGGATCGAGGA
GATCGAGACCAAGCCGGTGGATCGGCTGGTACGCGGCATGCCGGTGCGGGGGCTCAAGTCGGTGCTCTCCATCCGCCAGT
CCGCCTTCGGCAGCGAAGGGGAGCTCTATCTGTTCAGTACCGTGCTGGCCCACTTCTTCTCGCTCTATGCCAGCGTCAAC
GCCTTCCACCTGCTTGAGGTGGTCAATCTCGACAACAAGGAGCGCTACCAATGGCCAGTCCAGATCGGTCAGCACTCCCT
GATGTGA