Detailed information of component protein


Summary

Component ID T6CP259531
Component protein type TssG
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (333 a.a.); Nucleotide sequence (999 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109325
Coordinate (Strand) 69216..70214 (-)
NCBI ID WP_029301185.1
RefSeq NZ_JDWB01000021
Uniprot ID A0A3S7DM21_9GAMM, A0A6M4XNK5_9GAMM
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1.9e-94 18..318
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-332 MASPDRSALPDVSAAREAPRFNFFQLVELLNRLDGADQERGLDYLPGDENIRFKATASLGFPTSDVLQIGRDGQGRHELEVAFLGLHGSQSPMPGYYLDSLAWEYAQGEQKLGLFLDFFHHRLLTLLHRIWRKYRYHVRFQDNGEDGFSRLMFALVGLGNEAVCQSLPVNRAKMLSYAGMLASPSRSPEVVAGLVAHCFDLADVQVSAWQWRKVPIHQDQQNRLGGACATLGSDFVIGDKVNDCAGKFLLKINNLSFGQFLGFLPNGEHFHALVTFVSFILRDQLAWDLRLGFGQEQARGLRLGEEQSARLGWSTFLGQPPSDPFVTICVQE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9908 - -


  Protein sequence: 333 a.a.    

>T6CP259531 NZ_JDWB01000021:c70214-69216 [Aeromonas hydrophila] [TssG]
MASPDRSALPDVSAAREAPRFNFFQLVELLNRLDGADQERGLDYLPGDENIRFKATASLGFPTSDVLQIGRDGQGRHELE
VAFLGLHGSQSPMPGYYLDSLAWEYAQGEQKLGLFLDFFHHRLLTLLHRIWRKYRYHVRFQDNGEDGFSRLMFALVGLGN
EAVCQSLPVNRAKMLSYAGMLASPSRSPEVVAGLVAHCFDLADVQVSAWQWRKVPIHQDQQNRLGGACATLGSDFVIGDK
VNDCAGKFLLKINNLSFGQFLGFLPNGEHFHALVTFVSFILRDQLAWDLRLGFGQEQARGLRLGEEQSARLGWSTFLGQP
PSDPFVTICVQE*

  Nucleotide sequence: 999 bp    

>T6CP259531 NZ_JDWB01000021:c70214-69216 [Aeromonas hydrophila] [TssG]
ATGGCCAGTCCAGATCGGTCAGCACTCCCTGATGTGAGCGCCGCCCGGGAGGCGCCCCGTTTCAACTTCTTCCAGCTGGT
TGAGCTGCTCAACCGGCTCGATGGCGCCGATCAGGAGCGAGGGCTCGACTACCTGCCGGGTGACGAGAACATCCGCTTCA
AGGCGACCGCCTCCTTGGGGTTCCCCACCAGCGACGTGCTGCAGATTGGCCGGGACGGGCAGGGCCGCCACGAGCTGGAA
GTGGCCTTCCTCGGCCTGCACGGCAGTCAGTCGCCGATGCCCGGCTATTACCTCGATTCGCTGGCGTGGGAGTACGCCCA
AGGGGAGCAGAAGCTCGGCCTGTTTCTGGACTTCTTCCACCACCGTCTGCTGACCCTGCTGCACCGGATCTGGCGCAAGT
ATCGCTACCATGTGCGGTTTCAGGACAACGGCGAGGATGGTTTCTCCCGCCTGATGTTCGCCTTGGTGGGGCTCGGCAAC
GAGGCAGTCTGTCAGAGCCTGCCGGTCAACCGGGCCAAGATGCTCTCCTATGCGGGCATGCTGGCCAGCCCCAGCCGCTC
CCCCGAGGTGGTGGCCGGTCTGGTGGCCCACTGTTTCGATCTGGCCGACGTGCAAGTGAGCGCCTGGCAATGGCGCAAGG
TGCCTATTCATCAGGATCAGCAAAATCGCCTCGGCGGCGCCTGCGCCACCTTGGGGAGCGATTTTGTCATCGGTGACAAG
GTGAATGACTGTGCCGGCAAGTTCTTGTTGAAGATCAACAACCTGAGCTTTGGCCAGTTTCTCGGCTTTCTGCCGAACGG
GGAGCACTTCCATGCCCTGGTGACCTTCGTCTCCTTCATCCTGCGCGATCAGCTTGCCTGGGATCTACGTCTGGGATTCG
GCCAGGAGCAGGCGAGGGGGTTGAGGCTGGGGGAGGAGCAGAGTGCCCGCCTGGGGTGGAGTACCTTTCTCGGCCAGCCG
CCGAGTGATCCGTTCGTGACCATCTGCGTGCAGGAATAA