Detailed information of component protein


Summary

Component ID T6CP259530
Component protein type TagH
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (417 a.a.); Nucleotide sequence (1251 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109320
Coordinate (Strand) 67909..69159 (-)
NCBI ID WP_029301184.1
RefSeq NZ_JDWB01000021
Uniprot ID UPI0004937F2C
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 8.6e-05 34..101
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-416 VDDFNQQLSLVVLNSEQLDGSQQVQYRFDEMGGTLGASEQDDWQLRDRLGAVMPAHARIELNDGRFCLCDLSGQTYINGATSPIGRARKVHLEQGDELVVGPFRLRAYLGAITPEQSLQQVLGNRPTEQLDEWLTSDEPVVPADDSRTLAADPLLALQQERRAPNPLMDGPLADGRLQASLRSQPDVDVPPLAPFSAVENTMNQEFLDMPAIENHPDYQLSLDGVDHVALTPLMRGLGQPLQLQDTQQAHDMLEEMGKTVRAMVEGLLQLQNEQAALADKHLRPIEDNPLRLGLDYDETLAVLFAEQKSPVHLSAPAAVAESLHNVRIHHVANQQAIGAALDSILQAFSPQALLGRFEQYRRSGAPGTADEGWAWDMYQHYYRELTSARQQGFDKLFHQVYAQAYDQAVRQQQGLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9856 - -


  Protein sequence: 417 a.a.    

>T6CP259530 NZ_JDWB01000021:c69159-67909 [Aeromonas hydrophila] [TagH]
VDDFNQQLSLVVLNSEQLDGSQQVQYRFDEMGGTLGASEQDDWQLRDRLGAVMPAHARIELNDGRFCLCDLSGQTYINGA
TSPIGRARKVHLEQGDELVVGPFRLRAYLGAITPEQSLQQVLGNRPTEQLDEWLTSDEPVVPADDSRTLAADPLLALQQE
RRAPNPLMDGPLADGRLQASLRSQPDVDVPPLAPFSAVENTMNQEFLDMPAIENHPDYQLSLDGVDHVALTPLMRGLGQP
LQLQDTQQAHDMLEEMGKTVRAMVEGLLQLQNEQAALADKHLRPIEDNPLRLGLDYDETLAVLFAEQKSPVHLSAPAAVA
ESLHNVRIHHVANQQAIGAALDSILQAFSPQALLGRFEQYRRSGAPGTADEGWAWDMYQHYYRELTSARQQGFDKLFHQV
YAQAYDQAVRQQQGLI*

  Nucleotide sequence: 1251 bp    

>T6CP259530 NZ_JDWB01000021:c69159-67909 [Aeromonas hydrophila] [TagH]
GTGGACGATTTTAACCAGCAACTTTCCCTGGTGGTGCTCAACAGCGAACAGCTCGACGGCAGCCAGCAGGTGCAGTACCG
CTTCGATGAGATGGGGGGGACCCTGGGGGCCTCCGAACAGGATGACTGGCAACTGCGCGACAGGCTGGGGGCCGTCATGC
CCGCCCACGCCCGCATCGAGCTCAACGATGGTCGCTTCTGCCTGTGCGATCTGAGCGGCCAGACCTATATCAACGGTGCC
ACCTCGCCCATCGGGCGGGCCCGCAAGGTGCATCTGGAGCAGGGGGACGAGCTCGTGGTCGGCCCGTTCCGGCTGCGTGC
CTATCTGGGGGCCATCACCCCCGAGCAGAGCCTGCAACAGGTGCTGGGCAATCGCCCCACCGAGCAGCTCGACGAGTGGC
TGACCAGCGATGAGCCCGTCGTACCGGCTGACGATTCGCGCACCCTGGCGGCCGATCCCTTGCTGGCATTGCAGCAGGAG
CGCAGAGCGCCCAATCCGTTGATGGATGGCCCGCTGGCGGACGGTCGCCTGCAGGCTTCACTGCGTTCACAACCGGATGT
GGACGTTCCCCCTCTTGCCCCTTTTTCTGCTGTCGAGAACACCATGAACCAAGAATTTCTGGATATGCCCGCCATCGAGA
ACCATCCCGATTATCAGCTGTCGCTGGACGGCGTCGATCACGTGGCCCTGACTCCGCTGATGCGCGGCCTGGGTCAACCC
TTGCAATTGCAGGACACCCAGCAGGCCCACGACATGCTCGAAGAGATGGGCAAAACGGTGCGGGCCATGGTGGAGGGGTT
GCTGCAACTGCAAAACGAGCAGGCGGCGCTGGCAGACAAGCATCTGCGCCCCATCGAAGACAACCCGCTGCGCCTGGGCC
TTGATTATGACGAGACCCTGGCGGTGCTGTTTGCCGAGCAGAAGAGCCCGGTCCACCTGAGCGCGCCGGCGGCGGTGGCC
GAGAGCCTGCACAACGTGCGTATCCACCACGTGGCGAACCAGCAGGCCATCGGCGCGGCGCTCGACAGCATCCTGCAGGC
ATTTTCGCCGCAGGCCCTGCTGGGGCGTTTCGAACAATACCGCCGCAGCGGTGCGCCGGGCACGGCCGACGAAGGCTGGG
CCTGGGACATGTATCAGCACTACTACCGCGAGCTCACCTCCGCCCGTCAGCAGGGGTTCGACAAGCTGTTCCACCAGGTG
TATGCCCAGGCCTATGACCAGGCCGTGCGTCAGCAACAGGGACTGATTTGA