Detailed information of component protein
Summary
| Component ID | T6CP259529 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS17503  (Type i1) |
| Strain | Aeromonas hydrophila strain NF1 |
| Replicon | chromosome |
| Sequence | Protein sequence (172 a.a.); Nucleotide sequence (516 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BE47_RS0109315 |
| Coordinate (Strand) | 67394..67909 (-) |
| NCBI ID | WP_011705718.1 |
| RefSeq | NZ_JDWB01000021 |
| Uniprot ID | A0A2R4TWU3_AERHY, A0KJC1_AERHH, A0A0A5LBZ2_AERHY |
| KEGG ID | aha:AHA_1838, aaj:BOQ57_09025 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 3.3e-33 | 42..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-171 | MIRALMLGAALLALAGCTTMGKMADVAMNPDIQVGSNDSQPTTLGLSLLAEPDVNPNESGEAAPIEFQVVLLAEDSKLLATDYDQVTADVEKALGKNYLDHQDYTLLPGQFKYLPPIKLDEKTRYIGVIARYADPDSAEWRKVIKIKSKGTAYQILVHLRLDEVELQKEEE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9974 | pos: 16-17. LAG-CT. | MIRALMLGAALLALAG |
Protein sequence: 172 a.a.
>T6CP259529 NZ_JDWB01000021:c67909-67394 [Aeromonas hydrophila] [TssJ]
MIRALMLGAALLALAGCTTMGKMADVAMNPDIQVGSNDSQPTTLGLSLLAEPDVNPNESGEAAPIEFQVVLLAEDSKLLA
TDYDQVTADVEKALGKNYLDHQDYTLLPGQFKYLPPIKLDEKTRYIGVIARYADPDSAEWRKVIKIKSKGTAYQILVHLR
LDEVELQKEEE*
MIRALMLGAALLALAGCTTMGKMADVAMNPDIQVGSNDSQPTTLGLSLLAEPDVNPNESGEAAPIEFQVVLLAEDSKLLA
TDYDQVTADVEKALGKNYLDHQDYTLLPGQFKYLPPIKLDEKTRYIGVIARYADPDSAEWRKVIKIKSKGTAYQILVHLR
LDEVELQKEEE*
Nucleotide sequence: 516 bp
>T6CP259529 NZ_JDWB01000021:c67909-67394 [Aeromonas hydrophila] [TssJ]
ATGATACGTGCGCTGATGCTGGGCGCCGCGCTGCTGGCCCTGGCAGGTTGTACCACCATGGGCAAGATGGCCGACGTGGC
CATGAACCCGGATATCCAGGTGGGCAGCAATGACAGTCAACCGACGACCCTGGGGCTGAGCCTGCTGGCGGAGCCTGACG
TCAACCCCAACGAGAGCGGGGAGGCGGCGCCCATCGAGTTTCAGGTGGTGCTGCTGGCGGAGGATTCCAAGCTGCTCGCC
ACCGACTACGACCAGGTGACCGCGGACGTGGAGAAGGCCCTTGGCAAGAACTACCTGGACCATCAGGACTACACCCTGCT
GCCGGGCCAGTTCAAATACCTGCCCCCCATCAAGCTCGACGAGAAGACCCGCTACATCGGGGTGATCGCACGCTACGCCG
ACCCCGACAGCGCCGAATGGCGCAAGGTCATCAAGATCAAGAGCAAGGGAACGGCTTATCAAATCCTGGTGCACCTGCGC
CTGGATGAAGTGGAACTGCAAAAAGAAGAAGAATAA
ATGATACGTGCGCTGATGCTGGGCGCCGCGCTGCTGGCCCTGGCAGGTTGTACCACCATGGGCAAGATGGCCGACGTGGC
CATGAACCCGGATATCCAGGTGGGCAGCAATGACAGTCAACCGACGACCCTGGGGCTGAGCCTGCTGGCGGAGCCTGACG
TCAACCCCAACGAGAGCGGGGAGGCGGCGCCCATCGAGTTTCAGGTGGTGCTGCTGGCGGAGGATTCCAAGCTGCTCGCC
ACCGACTACGACCAGGTGACCGCGGACGTGGAGAAGGCCCTTGGCAAGAACTACCTGGACCATCAGGACTACACCCTGCT
GCCGGGCCAGTTCAAATACCTGCCCCCCATCAAGCTCGACGAGAAGACCCGCTACATCGGGGTGATCGCACGCTACGCCG
ACCCCGACAGCGCCGAATGGCGCAAGGTCATCAAGATCAAGAGCAAGGGAACGGCTTATCAAATCCTGGTGCACCTGCGC
CTGGATGAAGTGGAACTGCAAAAAGAAGAAGAATAA