Detailed information of component protein


Summary

Component ID T6CP259528
Component protein type TssK
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109310
Coordinate (Strand) 66057..67391 (-)
NCBI ID WP_029301183.1
RefSeq NZ_JDWB01000021
Uniprot ID A0A2I8R1C2_9GAMM, A0A7I6PXH6_9GAMM, A0A1V2F308_AERHY, A0A0T6V2Q6_9GAMM
KEGG ID aea:C2U39_08845
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.2e-157 19..441
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MSSRNRVIWREGLFIKPQHFQQQQRHSDYALHARLSALSDYFYGLQSLAINEDYLGFGRIALVGATGILPDGTVFNIPNDDVLPTPLEVTDASVANQKVYLALPLSVSGVNEVNQGGQVATRLQAHRHDVRDLHSEGGDVVSLEVGRVSLRLMLEREDRSAYASLAIARILDKRPDGGLVLDPNFMPCSISVSAIPTLKRFLGESAGLVAERARSLSQRIAAPGQQGVADVAEFMMLQLLNRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHDDQQVSFEPVMLALRQALSTVLSPRAVSIQLRKHQYGIMVAMVNESELMTSADFVLAVRARMPQEQLRKQLLQQTKVASSDKIRELISLQLPGIPLLPLPVAPRQLPYHAGYSYFQLDRQSPAWQMLAVGNTLAFHIAGDFPELDMQLWAIRSQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9891 - -


  Protein sequence: 445 a.a.    

>T6CP259528 NZ_JDWB01000021:c67391-66057 [Aeromonas hydrophila] [TssK]
MSSRNRVIWREGLFIKPQHFQQQQRHSDYALHARLSALSDYFYGLQSLAINEDYLGFGRIALVGATGILPDGTVFNIPND
DVLPTPLEVTDASVANQKVYLALPLSVSGVNEVNQGGQVATRLQAHRHDVRDLHSEGGDVVSLEVGRVSLRLMLEREDRS
AYASLAIARILDKRPDGGLVLDPNFMPCSISVSAIPTLKRFLGESAGLVAERARSLSQRIAAPGQQGVADVAEFMMLQLL
NRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHDDQQVSFEPVMLALRQALSTVLSPRAVSIQ
LRKHQYGIMVAMVNESELMTSADFVLAVRARMPQEQLRKQLLQQTKVASSDKIRELISLQLPGIPLLPLPVAPRQLPYHA
GYSYFQLDRQSPAWQMLAVGNTLAFHIAGDFPELDMQLWAIRSQ*

  Nucleotide sequence: 1335 bp    

>T6CP259528 NZ_JDWB01000021:c67391-66057 [Aeromonas hydrophila] [TssK]
ATGTCGAGTCGAAATCGGGTTATCTGGCGTGAGGGGCTGTTCATCAAGCCCCAGCACTTCCAGCAACAACAAAGACATTC
GGATTACGCGCTGCACGCTCGCCTGAGCGCGCTGTCCGATTATTTCTATGGCTTGCAGTCGCTCGCCATCAACGAGGATT
ACCTGGGTTTTGGTCGCATCGCCCTGGTGGGGGCCACCGGCATCCTGCCGGACGGGACCGTGTTCAACATCCCGAACGAC
GACGTGCTGCCGACCCCGCTGGAGGTCACCGACGCCTCGGTGGCCAACCAGAAGGTCTATCTGGCGCTGCCGCTCTCGGT
GAGCGGTGTCAACGAGGTCAATCAGGGTGGCCAGGTGGCCACCCGGTTGCAGGCCCATCGCCACGACGTGCGCGACTTGC
ACAGCGAAGGGGGGGACGTGGTCTCCCTCGAAGTGGGGCGGGTCAGCCTGCGGCTGATGCTGGAGCGGGAAGACCGTAGT
GCCTACGCATCTTTGGCCATCGCCCGCATTCTGGACAAGCGCCCGGACGGAGGCCTGGTGCTGGATCCCAACTTCATGCC
CTGCAGCATCAGCGTCTCCGCCATCCCGACCCTCAAACGCTTCCTCGGCGAGTCAGCCGGCCTCGTGGCCGAGCGGGCCC
GCAGCCTCTCCCAGCGCATCGCCGCGCCGGGTCAGCAAGGGGTGGCCGACGTGGCCGAGTTCATGATGCTGCAGCTGCTC
AACCGGGCTCAGCCCCAGCTCTCCCATCTGGCGCGCCTTGGCACCCTGCACCCCGAGCGGTTGCATGAGGCGCTGGTGCA
GCTCTGTGGCGAGCTGATGACCTTTACCGACGAGTCCCGCCTGCCGCCCGAGTTCCCTGCTTACCGTCACGACGATCAGC
AGGTGAGCTTCGAGCCGGTGATGCTGGCCCTGCGCCAGGCGCTCAGCACCGTGCTGTCGCCGCGCGCCGTCTCCATCCAG
CTGCGCAAGCACCAGTACGGCATCATGGTCGCCATGGTGAACGAGAGCGAGCTGATGACCAGCGCCGACTTCGTATTGGC
GGTGCGTGCCCGCATGCCGCAGGAGCAGCTGCGCAAGCAGTTGCTGCAGCAGACCAAGGTGGCCTCCAGCGACAAGATCC
GCGAGCTCATCAGCCTGCAACTGCCCGGCATTCCGCTGCTGCCGCTGCCGGTGGCGCCGCGCCAGCTGCCCTATCACGCC
GGTTACAGCTACTTCCAGCTCGACCGGCAGAGCCCGGCCTGGCAGATGCTGGCGGTGGGCAACACCCTTGCCTTCCACAT
CGCCGGCGACTTCCCCGAGCTCGACATGCAGCTCTGGGCCATTCGCAGCCAGTGA