Detailed information of component protein


Summary

Component ID T6CP259526
Component protein type TssH
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (881 a.a.); Nucleotide sequence (2643 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109300
Coordinate (Strand) 62592..65234 (-)
NCBI ID WP_029301181.1
RefSeq NZ_JDWB01000021
Uniprot ID UPI0004933CB0
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.7e-37 617..778
AAA_lid_9 PF17871.3 1.4e-28 362..453
ClpB_D2-small PF10431.11 3.1e-10 784..858
AAA PF00004.31 5.8e-08 222..317
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-880 MIRIELPVLVERLNPICRHMLEEAAALCVNHQGAEIRIEHLLLKMLETPLSDVRQILKVAEVEVEELKTLLQPSAADNGYGQGYPSFSPMLVEWLQDSWLLASAELQHAQLRSGVMLLVLLMTPQRYLPGSVTRLLAKVNRELLRQQFDEWVKESAETQVTVTSGGKTAQAALPADASLLARFTVNVTEQARQGSLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRMVAGQVPEKLRGVELMTLDLGAMQAGASVKGEFEKRFKGVMQEVKDAVQPVILFIDEAHTLIGAGNQAGGLDVSNLIKPALARGELRTIAATTWGEYKKYVEKDAALSRRFQLVKVGEPDADEATVILRGLRCIYEKAHGVLIDEEALQAAAQLSARYISGRQLPDKAIDVLDTACARVAINLTTPPRAVSHLQNALRQRELEIRQLERQSLIGLGDNAERLAELQAAQQACREELAEQEARWQQQQGLVHQIVELRAALLADQQDEMLTREALDLADAPLDPQAAAEQLATLERELAELQQGEVLVSAHVDKTQIAAVIAEWTGVPLNRISQGELDVVTRLPEYLGELIKGQDVAVAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIAELMFGGRQYLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRIIDCKNVVFFLTSNLGFQTIVDHAEQPDVLLDALYPELAAFFKPALLARMEVIPYLPLGHDTLVQIVGGKLNRLVKLLKERFGAEVVLDDEVAEEILLRANRSENGARMLESVIDGALLPPVSLQLLQRLSAGEPIKRVHFSVADHQFVAEVGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9978 - -


  Protein sequence: 881 a.a.    

>T6CP259526 NZ_JDWB01000021:c65234-62592 [Aeromonas hydrophila] [TssH]
MIRIELPVLVERLNPICRHMLEEAAALCVNHQGAEIRIEHLLLKMLETPLSDVRQILKVAEVEVEELKTLLQPSAADNGY
GQGYPSFSPMLVEWLQDSWLLASAELQHAQLRSGVMLLVLLMTPQRYLPGSVTRLLAKVNRELLRQQFDEWVKESAETQV
TVTSGGKTAQAALPADASLLARFTVNVTEQARQGSLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLAL
RMVAGQVPEKLRGVELMTLDLGAMQAGASVKGEFEKRFKGVMQEVKDAVQPVILFIDEAHTLIGAGNQAGGLDVSNLIKP
ALARGELRTIAATTWGEYKKYVEKDAALSRRFQLVKVGEPDADEATVILRGLRCIYEKAHGVLIDEEALQAAAQLSARYI
SGRQLPDKAIDVLDTACARVAINLTTPPRAVSHLQNALRQRELEIRQLERQSLIGLGDNAERLAELQAAQQACREELAEQ
EARWQQQQGLVHQIVELRAALLADQQDEMLTREALDLADAPLDPQAAAEQLATLERELAELQQGEVLVSAHVDKTQIAAV
IAEWTGVPLNRISQGELDVVTRLPEYLGELIKGQDVAVAHLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVLQIA
ELMFGGRQYLTTINMSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGEL
ADGEGRIIDCKNVVFFLTSNLGFQTIVDHAEQPDVLLDALYPELAAFFKPALLARMEVIPYLPLGHDTLVQIVGGKLNRL
VKLLKERFGAEVVLDDEVAEEILLRANRSENGARMLESVIDGALLPPVSLQLLQRLSAGEPIKRVHFSVADHQFVAEVGA
*

  Nucleotide sequence: 2643 bp    

>T6CP259526 NZ_JDWB01000021:c65234-62592 [Aeromonas hydrophila] [TssH]
TTGATTCGTATAGAGCTACCGGTACTGGTGGAAAGACTCAACCCCATCTGCCGTCACATGCTGGAGGAGGCTGCGGCCCT
CTGCGTCAATCACCAGGGAGCCGAGATCCGTATCGAGCATTTGCTGCTCAAGATGCTGGAGACCCCGCTGAGCGACGTGC
GCCAGATCCTGAAGGTGGCCGAGGTGGAGGTGGAAGAGCTCAAGACCCTGCTGCAACCGTCCGCTGCCGACAACGGCTAT
GGCCAGGGTTACCCCTCCTTCTCGCCCATGTTGGTGGAGTGGCTGCAAGACAGCTGGCTGCTCGCCTCCGCCGAGCTGCA
ACATGCCCAGCTGCGCAGCGGTGTCATGCTGCTGGTGCTGCTGATGACCCCGCAGCGCTACCTGCCGGGTTCGGTGACTC
GTTTGCTCGCCAAGGTCAATCGCGAGCTGCTGCGCCAGCAGTTCGACGAGTGGGTCAAGGAGTCTGCCGAGACGCAAGTG
ACCGTCACCAGCGGCGGCAAGACGGCACAGGCAGCCCTGCCGGCCGATGCCAGCCTGCTGGCCCGCTTTACCGTCAACGT
GACCGAACAGGCCCGCCAGGGCAGCCTGGATCCCGTGCTCTGCCGGGATCACGAAATCGACCTGATGATCGACATCCTCT
CCCGTCGTCGCAAGAACAACCCCATCGTGGTGGGTGAGGCCGGTGTCGGCAAGAGCGCCCTCATTGAGGGGCTGGCTCTG
CGCATGGTGGCGGGTCAGGTGCCCGAGAAGCTACGCGGGGTCGAGCTGATGACCCTAGATCTCGGTGCCATGCAGGCCGG
CGCCTCGGTCAAGGGGGAGTTCGAGAAGCGCTTCAAGGGGGTGATGCAGGAGGTCAAGGATGCCGTGCAACCTGTCATCC
TGTTCATCGACGAGGCGCACACCCTGATCGGGGCCGGCAACCAGGCCGGCGGGCTGGATGTTTCCAACCTCATCAAGCCG
GCGCTGGCCCGGGGCGAGCTGCGCACCATCGCCGCCACCACCTGGGGCGAGTACAAGAAATACGTGGAGAAAGACGCGGC
CCTGTCGCGCCGCTTCCAGCTGGTGAAAGTCGGTGAGCCCGATGCCGACGAGGCCACGGTGATCCTGCGCGGCCTGCGCT
GCATCTACGAGAAGGCCCACGGGGTGCTGATCGACGAGGAGGCGCTACAGGCTGCCGCCCAGCTCTCCGCCCGTTACATC
TCCGGCCGTCAGCTGCCGGACAAGGCTATTGACGTGCTCGATACCGCCTGTGCCCGGGTGGCCATCAACCTCACCACCCC
GCCACGCGCGGTCAGCCACCTGCAAAATGCGCTGCGCCAGCGCGAGCTGGAGATCCGCCAGCTGGAGCGCCAGAGCCTGA
TAGGGCTCGGTGACAATGCAGAGCGCCTGGCCGAGTTGCAGGCGGCCCAGCAGGCTTGCCGTGAAGAGCTGGCCGAGCAG
GAGGCCCGGTGGCAGCAGCAGCAGGGGCTGGTACACCAGATTGTCGAGCTGCGCGCAGCGCTGCTGGCCGATCAGCAGGA
TGAGATGCTGACCAGAGAGGCGTTGGATCTGGCCGATGCGCCGCTCGATCCGCAAGCCGCTGCCGAGCAGCTGGCTACCC
TCGAGCGCGAGCTGGCCGAGCTGCAGCAAGGAGAAGTGCTGGTCTCCGCCCACGTCGACAAGACCCAGATTGCCGCCGTC
ATTGCCGAGTGGACCGGGGTGCCACTCAATCGTATCTCCCAAGGGGAGCTGGACGTGGTGACCCGCCTGCCGGAATACCT
CGGCGAGCTCATCAAGGGGCAGGATGTGGCAGTGGCCCACCTGCACAAGCACCTGCTCACCGCCCGCGCCGACCTGCGTC
GTCCCGGCCGCCCGCTCGGTGCCTTCCTGCTGGTGGGGCCGAGCGGGGTCGGCAAGACCGAAACCGTGCTGCAGATTGCC
GAGCTGATGTTCGGTGGCCGCCAGTATCTGACCACCATCAACATGTCCGAGTATCAGGAGAAGCACACCGTCTCGCGCCT
GATCGGCTCGCCGCCCGGCTACGTCGGTTTCGGTGAGGGGGGCGTGCTGACCGAGGCGATTCGGCAGAAGCCTTACTCAG
TGGTGCTGCTGGACGAGGTGGAGAAGGCCCACCCGGACGTGCTCAACCTCTTCTATCAGGCGTTCGACAAGGGCGAGCTG
GCGGACGGGGAAGGGCGCATCATCGACTGCAAGAACGTGGTTTTCTTCCTCACCTCCAACCTCGGTTTCCAGACCATCGT
CGATCACGCCGAGCAGCCCGACGTGCTGCTGGATGCCCTCTATCCGGAGCTCGCCGCCTTCTTCAAGCCGGCGCTGCTGG
CGCGCATGGAGGTGATCCCCTATCTGCCGCTGGGTCACGACACGCTAGTGCAGATCGTGGGCGGCAAGCTCAACCGGCTG
GTCAAGCTGCTCAAGGAGCGCTTCGGCGCCGAGGTGGTGCTGGACGACGAAGTGGCCGAGGAGATCCTGCTGCGGGCCAA
TCGCAGCGAGAACGGTGCCCGCATGCTCGAGTCCGTCATCGACGGTGCCCTGCTGCCGCCGGTCTCCCTGCAGCTGCTGC
AGCGCCTCTCGGCCGGTGAACCCATCAAGCGCGTCCACTTTTCCGTGGCCGATCACCAGTTCGTGGCCGAGGTGGGGGCT
TGA