Detailed information of component protein


Summary

Component ID T6CP259525
Component protein type VasH
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (513 a.a.); Nucleotide sequence (1539 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109295
Coordinate (Strand) 61051..62589 (-)
NCBI ID WP_029301180.1
RefSeq NZ_JDWB01000021
Uniprot ID UPI00049332FB
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Sigma54_activat PF00158.28 8.8e-66 198..361
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-512 MEQALAFALALTAQRDEPHLCHWWSSTVHASFQPRGLLLGMLDVSGRQLECQGWVRGKEVALGLAVDDFSHPLAYVLHKAQSRTWDSLYGGARIEHAGFRALLANLGQQCGLHAYPLLDGNGKPFAVLALMDEGEVLRAWADGPELAQLSQVFCNQLTLIRDLGRSRRDQGVLRDSLRQMKGEGERLRQHEKLLGDQLVGQSAVIRGLREQINQAGQHKLTVLIQGETGSGKEVVARLVHQCSDRANKPFVAINCAAIPENLIESELFGYQKGAFSGALANKTGLVAQANGGTLFLDEVGDMPAAMQAKLLRVLETRSYRPLGAEQEYHSDFRLIAATHQPLTRHVEEGQFRADLYHRLCQCLLLIAPLREHMDDVPLLCQHFMAQFAAQDGKTLVGLQRKFLKQLQTYDFPGNVRELRNLLEVACAHTRHGEEVGLEALPPELRERVSALLPSSMDDYNHIRDLRRAMQQYEASVIEARLRHFQGNRMLVAESLNIPKRTLDHKCQKLEVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9204 - -


  Protein sequence: 513 a.a.    

>T6CP259525 NZ_JDWB01000021:c62589-61051 [Aeromonas hydrophila] [VasH]
MEQALAFALALTAQRDEPHLCHWWSSTVHASFQPRGLLLGMLDVSGRQLECQGWVRGKEVALGLAVDDFSHPLAYVLHKA
QSRTWDSLYGGARIEHAGFRALLANLGQQCGLHAYPLLDGNGKPFAVLALMDEGEVLRAWADGPELAQLSQVFCNQLTLI
RDLGRSRRDQGVLRDSLRQMKGEGERLRQHEKLLGDQLVGQSAVIRGLREQINQAGQHKLTVLIQGETGSGKEVVARLVH
QCSDRANKPFVAINCAAIPENLIESELFGYQKGAFSGALANKTGLVAQANGGTLFLDEVGDMPAAMQAKLLRVLETRSYR
PLGAEQEYHSDFRLIAATHQPLTRHVEEGQFRADLYHRLCQCLLLIAPLREHMDDVPLLCQHFMAQFAAQDGKTLVGLQR
KFLKQLQTYDFPGNVRELRNLLEVACAHTRHGEEVGLEALPPELRERVSALLPSSMDDYNHIRDLRRAMQQYEASVIEAR
LRHFQGNRMLVAESLNIPKRTLDHKCQKLEVN*

  Nucleotide sequence: 1539 bp    

>T6CP259525 NZ_JDWB01000021:c62589-61051 [Aeromonas hydrophila] [VasH]
ATGGAGCAAGCCCTCGCATTTGCCCTGGCCCTCACCGCCCAGCGTGATGAGCCGCACCTGTGCCACTGGTGGAGCTCGAC
CGTCCATGCCAGCTTTCAGCCCAGGGGGCTGCTGCTCGGCATGCTGGATGTGAGTGGCCGTCAGCTGGAGTGCCAAGGCT
GGGTCAGGGGGAAGGAAGTGGCGCTGGGGCTGGCGGTGGACGATTTTTCCCACCCGCTTGCCTATGTGCTGCACAAGGCC
CAGTCCCGCACCTGGGACTCCCTCTACGGCGGTGCCCGCATCGAGCACGCCGGTTTTCGCGCACTGCTGGCCAACCTTGG
CCAGCAGTGCGGGCTGCACGCGTATCCGCTGCTGGATGGCAACGGCAAGCCGTTTGCCGTGCTGGCCCTGATGGATGAGG
GGGAGGTGCTGCGGGCCTGGGCCGACGGCCCCGAGCTGGCCCAGCTCTCCCAGGTCTTTTGCAACCAGCTCACCCTCATT
CGCGATCTCGGTCGCAGTCGGCGGGATCAAGGGGTACTGCGCGACTCCCTGCGTCAGATGAAAGGGGAGGGGGAGCGGCT
GCGCCAGCACGAGAAGCTGCTCGGCGATCAGCTGGTCGGTCAATCGGCGGTGATCCGCGGGCTGCGCGAGCAGATCAACC
AGGCCGGCCAGCACAAGCTGACCGTGCTGATCCAGGGGGAGACCGGCAGCGGCAAGGAGGTGGTGGCACGGTTGGTGCAC
CAGTGCTCCGATCGCGCCAACAAGCCCTTTGTCGCCATCAACTGCGCCGCCATTCCGGAGAACCTCATCGAGAGCGAGCT
GTTTGGTTATCAGAAGGGGGCCTTCTCCGGCGCTCTGGCCAACAAGACCGGGCTGGTGGCCCAGGCCAACGGCGGCACCC
TGTTTCTGGACGAGGTGGGGGACATGCCCGCCGCCATGCAGGCCAAGCTGCTGCGGGTGCTGGAAACCCGCAGTTACCGG
CCGCTCGGGGCCGAGCAGGAGTATCACTCCGATTTTCGCCTCATCGCCGCCACCCATCAGCCGCTCACCCGCCATGTGGA
GGAGGGGCAGTTTCGGGCTGACCTCTATCACCGCCTCTGTCAGTGCCTGCTGCTGATCGCCCCCCTGCGCGAGCACATGG
ATGACGTGCCGCTGCTGTGCCAGCACTTCATGGCCCAGTTTGCCGCCCAGGATGGCAAGACCCTGGTGGGGCTGCAGCGC
AAGTTCTTGAAACAGCTGCAGACCTATGACTTCCCCGGCAACGTGCGCGAGCTGCGCAACCTGCTGGAGGTGGCCTGTGC
CCATACCCGTCACGGGGAGGAGGTGGGGCTGGAGGCGCTGCCGCCGGAGCTGCGCGAGCGGGTCAGCGCCCTGCTGCCCT
CTTCCATGGACGACTACAACCACATCCGCGATCTGCGCCGGGCCATGCAGCAGTACGAGGCCTCGGTCATCGAGGCGCGG
CTGCGCCACTTCCAGGGCAATCGGATGCTGGTGGCCGAGAGCCTCAACATTCCCAAGCGCACCCTGGATCACAAGTGCCA
GAAACTGGAGGTGAACTGA