Detailed information of component protein


Summary

Component ID T6CP259523
Component protein type TssA
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (482 a.a.); Nucleotide sequence (1446 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109285
Coordinate (Strand) 58992..60437 (-)
NCBI ID WP_029301178.1
RefSeq NZ_JDWB01000021
Uniprot ID UPI0004939F47
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 2.5e-79 232..474
ImpA_N PF06812.14 2.8e-15 13..110
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-481 MSYQHPWCARLLTSLPDEQIRGAVLADEPRWDYVETELVKLGSLAHSQVDLNAVAEACLGLLESRTKDMRVLAQLLRCLQHPAKATPLGAAISLLEAWLQAYWLLAWPGNASQKQRLMVQIVKRFEGALPRICESASAAELAQLLAQAEQLERVWLAQCPDKGELLDPLVMGLKRAQRQQVAQAEANAAGQPQSSGAAAAGSLASVASTASSAGAMVLSGGGGSASVDVDSSNDRAWRQTQLKVAELLIERQPEAAVGYRLRRHAVWAGITAVPMSGADNKTPLAPMSADMVDEYRAAMNAPDQGLWQRIEQSLTLAPYWFEGHRLSAEVAQKLGFGAVAQAIAEELGTFLQRLPALRELAFSDGSPFLSPECSRWLQPAKGSSAGSGEAGLAEEVAQRHGEQGIAAALALLDERIAQLKEPRDRFHALLVQAELLAQEGMEALARQHYQHLWQEASRLGLSHWEPGLVNRLESLAAPLSK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9899 - -


  Protein sequence: 482 a.a.    

>T6CP259523 NZ_JDWB01000021:c60437-58992 [Aeromonas hydrophila] [TssA]
MSYQHPWCARLLTSLPDEQIRGAVLADEPRWDYVETELVKLGSLAHSQVDLNAVAEACLGLLESRTKDMRVLAQLLRCLQ
HPAKATPLGAAISLLEAWLQAYWLLAWPGNASQKQRLMVQIVKRFEGALPRICESASAAELAQLLAQAEQLERVWLAQCP
DKGELLDPLVMGLKRAQRQQVAQAEANAAGQPQSSGAAAAGSLASVASTASSAGAMVLSGGGGSASVDVDSSNDRAWRQT
QLKVAELLIERQPEAAVGYRLRRHAVWAGITAVPMSGADNKTPLAPMSADMVDEYRAAMNAPDQGLWQRIEQSLTLAPYW
FEGHRLSAEVAQKLGFGAVAQAIAEELGTFLQRLPALRELAFSDGSPFLSPECSRWLQPAKGSSAGSGEAGLAEEVAQRH
GEQGIAAALALLDERIAQLKEPRDRFHALLVQAELLAQEGMEALARQHYQHLWQEASRLGLSHWEPGLVNRLESLAAPLS
K*

  Nucleotide sequence: 1446 bp    

>T6CP259523 NZ_JDWB01000021:c60437-58992 [Aeromonas hydrophila] [TssA]
ATGAGCTATCAACACCCCTGGTGTGCACGCCTGCTCACCAGCCTGCCGGATGAACAGATAAGAGGCGCCGTGCTGGCCGA
CGAGCCGCGCTGGGACTACGTGGAGACCGAGTTGGTCAAGCTGGGTTCCCTCGCTCACAGCCAGGTCGATCTCAATGCGG
TGGCCGAGGCGTGCCTTGGCTTGCTGGAGAGCCGCACCAAGGACATGCGGGTGCTGGCCCAGCTGCTGCGCTGTCTGCAG
CACCCGGCCAAGGCGACCCCGCTGGGGGCGGCGATCAGCCTGCTGGAGGCCTGGCTCCAGGCTTACTGGCTGCTGGCCTG
GCCCGGCAATGCCAGCCAGAAGCAGCGACTGATGGTGCAGATTGTCAAGCGCTTCGAAGGGGCCCTGCCGCGCATTTGTG
AGAGCGCTTCGGCGGCCGAGCTGGCCCAGTTGCTGGCCCAGGCCGAGCAGCTGGAGCGGGTCTGGCTGGCGCAGTGTCCC
GACAAGGGGGAGCTGCTCGACCCGCTGGTGATGGGGCTGAAGCGGGCCCAGCGCCAGCAGGTGGCTCAGGCCGAGGCCAA
TGCCGCAGGGCAGCCCCAGAGCAGCGGCGCTGCGGCAGCGGGCTCCCTGGCCTCGGTAGCGTCGACCGCCAGCAGCGCCG
GCGCCATGGTGCTCAGCGGCGGTGGCGGCAGTGCCAGCGTCGACGTCGACAGTTCCAACGATCGTGCCTGGCGCCAGACT
CAGCTCAAGGTGGCTGAGCTCCTGATCGAGCGCCAGCCGGAGGCGGCGGTGGGCTATCGGCTGCGCCGTCACGCCGTCTG
GGCCGGGATCACGGCGGTCCCCATGAGCGGGGCGGACAATAAAACCCCGTTGGCGCCCATGTCGGCGGACATGGTGGACG
AGTATCGAGCCGCCATGAACGCCCCTGATCAGGGGCTCTGGCAGCGCATCGAGCAGAGTCTGACCCTGGCCCCTTACTGG
TTCGAGGGGCACAGGCTTTCGGCCGAGGTGGCCCAGAAACTCGGCTTTGGGGCGGTGGCCCAGGCGATCGCCGAGGAGCT
CGGGACTTTTCTGCAGCGCCTGCCGGCCTTGCGGGAGCTCGCCTTCAGCGACGGCTCGCCGTTTCTCTCCCCCGAGTGCA
GCCGCTGGCTGCAACCTGCCAAGGGGAGCAGTGCGGGCAGTGGCGAGGCGGGGCTGGCCGAGGAGGTCGCCCAGCGCCAT
GGCGAGCAGGGGATCGCGGCGGCGCTCGCCCTGCTCGATGAGCGGATTGCGCAGTTGAAAGAGCCAAGAGATCGCTTCCA
CGCCTTGCTGGTGCAGGCGGAGCTGTTGGCGCAGGAAGGCATGGAGGCGCTTGCGCGCCAGCACTATCAACACTTGTGGC
AAGAGGCCAGTCGCCTCGGGTTGTCGCACTGGGAGCCCGGGCTGGTCAACCGCCTGGAGAGCCTGGCGGCGCCGTTGTCG
AAATGA