Detailed information of component protein


Summary

Component ID T6CP259520
Component protein type TssI
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (684 a.a.); Nucleotide sequence (2052 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109265
Coordinate (Strand) 51381..53432 (-)
NCBI ID WP_029301175.1
RefSeq NZ_JDWB01000021
Uniprot ID UPI0004932920
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.8e-89 29..327
Phage_base_V PF04717.14 1.5e-14 389..456
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-683 MADSTGLQFTVKVGALPESTFVVAEFALNEALNRPFNLRLELASAQPDIDFGAVLDQPCELLVWYNGELQRRVCGVVSDFAQGDSGFRRTRYQLLVQPALWRLSLRHNSRIFQAQKPDEILSIILQEHGITDYAFALKNEHAKREYCVQYRETDLDFVNRLAAEEGMFYFHEFEAGKHRIVFADDAAALTAGPELFFNLGNRSLEQGPYVRQFHYREAVRPSDVELKDYSFKTPAYGLSHKKQGAELEHQRDTYQHFDFPGRYKQDGSGKAFAQHRLDALRNDAVAGQAKSNCAALLPGQTFSLTEHPNGSLNTDWQIVHIRHTGEQPQALEEEGGSGPTVYHNEFGVVKASTTWRARIGSPEAPHKPMVDGPQIAMVVGPDGEEIYCDEHGRVKLQFPWDRYGSSNDQSSCWVRVSQGWAGGQYGMMAIPRIGHEVIVSFLEGDPDQPIVTGRTYHATNRPPYELPANKTRTVLRTETHQGEGFNELRFEDQAGQEEIYIHGQKDLNVLIENDAAWHIKHDQHTDIDNERVTRIKANDHLTVEGEKRDQIKADYSLTVDASLHQKLGQSLLVEAGQEVHIKVGDKLVLEAGSEITLKGGGSFVKVDPSGIKLVGPAIKLNAGGSAGSGSGSGWAGQPPIIPKGVEVVKAPELVELVKAIATEKAMEALLKALEPDSDYQPSA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9863 - -


  Protein sequence: 684 a.a.    

>T6CP259520 NZ_JDWB01000021:c53432-51381 [Aeromonas hydrophila] [TssI]
MADSTGLQFTVKVGALPESTFVVAEFALNEALNRPFNLRLELASAQPDIDFGAVLDQPCELLVWYNGELQRRVCGVVSDF
AQGDSGFRRTRYQLLVQPALWRLSLRHNSRIFQAQKPDEILSIILQEHGITDYAFALKNEHAKREYCVQYRETDLDFVNR
LAAEEGMFYFHEFEAGKHRIVFADDAAALTAGPELFFNLGNRSLEQGPYVRQFHYREAVRPSDVELKDYSFKTPAYGLSH
KKQGAELEHQRDTYQHFDFPGRYKQDGSGKAFAQHRLDALRNDAVAGQAKSNCAALLPGQTFSLTEHPNGSLNTDWQIVH
IRHTGEQPQALEEEGGSGPTVYHNEFGVVKASTTWRARIGSPEAPHKPMVDGPQIAMVVGPDGEEIYCDEHGRVKLQFPW
DRYGSSNDQSSCWVRVSQGWAGGQYGMMAIPRIGHEVIVSFLEGDPDQPIVTGRTYHATNRPPYELPANKTRTVLRTETH
QGEGFNELRFEDQAGQEEIYIHGQKDLNVLIENDAAWHIKHDQHTDIDNERVTRIKANDHLTVEGEKRDQIKADYSLTVD
ASLHQKLGQSLLVEAGQEVHIKVGDKLVLEAGSEITLKGGGSFVKVDPSGIKLVGPAIKLNAGGSAGSGSGSGWAGQPPI
IPKGVEVVKAPELVELVKAIATEKAMEALLKALEPDSDYQPSA*

  Nucleotide sequence: 2052 bp    

>T6CP259520 NZ_JDWB01000021:c53432-51381 [Aeromonas hydrophila] [TssI]
ATGGCAGACAGCACAGGATTACAATTTACCGTCAAGGTGGGGGCCCTGCCCGAGAGCACCTTCGTGGTGGCCGAGTTTGC
GCTGAATGAAGCGCTCAACCGGCCGTTCAACCTGCGCCTGGAGCTGGCAAGTGCCCAGCCCGACATCGACTTTGGCGCCG
TGCTGGACCAGCCGTGCGAGCTGCTGGTGTGGTACAACGGCGAACTGCAGCGGCGGGTGTGCGGAGTGGTCAGTGACTTC
GCGCAGGGTGACAGCGGCTTTCGCCGCACCCGCTATCAGCTGCTGGTGCAGCCGGCCCTGTGGCGGCTGTCACTTCGCCA
CAACTCCCGCATCTTCCAGGCGCAGAAGCCCGATGAAATTCTCTCAATTATCCTGCAAGAGCACGGTATCACCGACTATG
CCTTTGCCCTCAAGAACGAACATGCCAAGCGGGAATACTGCGTTCAGTATCGCGAGACCGACCTCGATTTTGTGAACCGC
CTCGCCGCCGAAGAGGGGATGTTCTACTTCCACGAGTTTGAAGCGGGCAAACATCGCATCGTGTTTGCCGATGACGCGGC
CGCCCTGACCGCCGGCCCCGAGCTCTTCTTCAACCTCGGTAACCGTTCGCTGGAGCAAGGCCCCTATGTGCGGCAGTTCC
ACTACCGGGAGGCGGTACGCCCGTCGGATGTGGAGCTCAAAGACTACAGCTTCAAGACCCCGGCTTACGGTCTCTCCCAC
AAAAAGCAGGGCGCAGAGCTCGAGCATCAACGGGATACCTACCAGCACTTCGATTTTCCGGGCCGCTACAAGCAGGATGG
CAGCGGCAAGGCCTTTGCCCAGCATAGACTGGATGCGCTGCGCAATGACGCGGTGGCGGGCCAGGCTAAATCCAACTGCG
CGGCTTTGCTGCCGGGGCAGACGTTTTCACTCACTGAACACCCCAACGGCAGCCTCAACACCGACTGGCAAATCGTCCAT
ATCCGTCACACCGGTGAACAACCCCAGGCCTTGGAAGAAGAAGGCGGCAGCGGCCCCACCGTCTATCACAACGAATTTGG
GGTGGTGAAAGCCAGCACCACCTGGCGCGCCCGCATCGGCAGCCCCGAGGCCCCTCACAAGCCGATGGTGGATGGCCCGC
AAATCGCCATGGTGGTGGGCCCCGACGGTGAGGAGATTTACTGCGACGAGCACGGTCGGGTGAAGCTGCAATTCCCGTGG
GACCGCTACGGTTCGAGCAACGACCAGAGTTCGTGCTGGGTGCGAGTCTCGCAAGGCTGGGCCGGCGGCCAATATGGCAT
GATGGCCATACCGCGCATCGGCCACGAGGTCATCGTGAGCTTTTTGGAAGGCGACCCCGACCAGCCCATCGTCACCGGCC
GCACCTATCATGCCACCAACCGGCCGCCGTACGAGCTGCCGGCCAACAAGACCCGCACCGTGCTGCGCACCGAAACCCAC
CAGGGTGAAGGTTTCAACGAGCTGCGCTTTGAAGACCAGGCGGGGCAGGAAGAGATTTACATCCACGGTCAGAAAGACCT
GAACGTGCTTATCGAAAATGATGCCGCCTGGCACATCAAGCACGACCAGCACACCGATATCGACAACGAGCGGGTGACCC
GCATCAAGGCCAATGACCACCTGACGGTAGAGGGTGAGAAGCGCGACCAGATAAAAGCCGACTACTCGCTGACGGTGGAT
GCCAGCCTGCACCAGAAGCTGGGGCAGTCGCTACTGGTGGAGGCCGGTCAGGAAGTGCATATCAAGGTGGGTGACAAGCT
GGTGCTGGAGGCGGGTTCCGAGATCACCCTCAAGGGGGGGGGCAGCTTTGTGAAAGTGGACCCGAGCGGCATCAAGCTGG
TGGGCCCCGCCATCAAGCTCAATGCCGGCGGCAGCGCAGGCTCAGGCTCAGGCTCTGGCTGGGCAGGTCAGCCTCCCATC
ATCCCCAAAGGCGTGGAAGTGGTGAAAGCCCCTGAACTGGTTGAACTGGTCAAGGCTATTGCCACCGAGAAGGCGATGGA
AGCGTTGCTCAAGGCGCTGGAGCCCGATAGCGATTATCAGCCCTCCGCTTGA