Detailed information of component protein


Summary

Component ID T6CP259519
Component protein type TssH
T6SS ID (Type) T6SS17503 experimental (Type i1)
Strain Aeromonas hydrophila strain NF1
Replicon chromosome
Sequence Protein sequence (751 a.a.); Nucleotide sequence (2253 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BE47_RS0109225
Coordinate (Strand) 42575..44827 (-)
NCBI ID WP_024944043.1
RefSeq NZ_JDWB01000021
Uniprot ID A0A2R4TWW6_AERHY, A0A7G1L689_AERHY
KEGG ID ahh:RY45_09985
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.1e-48 483..643
AAA_lid_9 PF17871.3 2.4e-29 347..450
ClpB_D2-small PF10431.11 2e-23 650..730
Clp_N PF02861.22 5.9e-12 13..62
AAA PF00004.31 2.4e-11 208..298
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-750 MLNKDLEKTLNEAFKLARDERHEFMTVEHLLLALLDNSSAHEALSSCGADVELMRKEISAFISQTTPLIPRDDEDRETQPTLGFQRVLQRAVFHVQSSGNTEVSGANVLVAIFSEQESQAAYFLKKAEISRLDVVNFLSHGVRKDSKPDNSSNNAESDDDVSAAQIESFATNLNQLVLEGRIDPLIGRDQELNRTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAYRIVKGDVPEVIAGSTIYSLDMGSLLAGTKYRGDFEKRLKVLLKQIERQEGAILFIDEIHTIIGAGAASGGQLDAANLIKPLLSNGLLRCVGSTTYQEYSQIFEKDRALARRFQKIDIVEPSVDDTTRILMGLKSRYEAHHGVRYTVKAIRAAVELSAKYINDRHLPDKAIDVIDEAGAGQRLLPASKRKKVINVQEIEAIVAKIARIPEKSVSSSDKEVLKNLERNLKMVVFGQDKAIEVLTDSIRLSRSGLGNERRPVGCFLFAGPTGVGKTEVTQQLGKALGVEVLRFDMSEYMERHTVSRLIGAPPGYVGFEQGGLLTDSVLKHPHSVVLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVQETQRKSIGFQQQDMSHDAMAVINKTFSPEFRNRLDHTIWFNHLDMQVIHQVVDKFIVELQVQLDAKGVSLEVSEGVRHWLAEKGYDRAMGARPMGRVIQEHLKKPLANEILFGSLVDGGVVKVELINDSLSFDYQVNVEAVSH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9509 - -


  Protein sequence: 751 a.a.    

>T6CP259519 NZ_JDWB01000021:c44827-42575 [Aeromonas hydrophila] [TssH]
MLNKDLEKTLNEAFKLARDERHEFMTVEHLLLALLDNSSAHEALSSCGADVELMRKEISAFISQTTPLIPRDDEDRETQP
TLGFQRVLQRAVFHVQSSGNTEVSGANVLVAIFSEQESQAAYFLKKAEISRLDVVNFLSHGVRKDSKPDNSSNNAESDDD
VSAAQIESFATNLNQLVLEGRIDPLIGRDQELNRTIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAYRIVKGDVPEVIAGS
TIYSLDMGSLLAGTKYRGDFEKRLKVLLKQIERQEGAILFIDEIHTIIGAGAASGGQLDAANLIKPLLSNGLLRCVGSTT
YQEYSQIFEKDRALARRFQKIDIVEPSVDDTTRILMGLKSRYEAHHGVRYTVKAIRAAVELSAKYINDRHLPDKAIDVID
EAGAGQRLLPASKRKKVINVQEIEAIVAKIARIPEKSVSSSDKEVLKNLERNLKMVVFGQDKAIEVLTDSIRLSRSGLGN
ERRPVGCFLFAGPTGVGKTEVTQQLGKALGVEVLRFDMSEYMERHTVSRLIGAPPGYVGFEQGGLLTDSVLKHPHSVVLL
DEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVILVMTTNAGVQETQRKSIGFQQQDMSHDAMAVINKTFSPEFRNR
LDHTIWFNHLDMQVIHQVVDKFIVELQVQLDAKGVSLEVSEGVRHWLAEKGYDRAMGARPMGRVIQEHLKKPLANEILFG
SLVDGGVVKVELINDSLSFDYQVNVEAVSH*

  Nucleotide sequence: 2253 bp    

>T6CP259519 NZ_JDWB01000021:c44827-42575 [Aeromonas hydrophila] [TssH]
ATGTTGAATAAAGATCTAGAAAAGACGCTGAACGAGGCTTTCAAACTGGCCCGTGACGAGCGCCACGAATTCATGACTGT
CGAGCACCTGTTGTTAGCCCTGCTGGATAACAGCTCAGCCCATGAGGCGCTGAGTTCTTGTGGTGCTGACGTGGAGCTGA
TGCGCAAAGAGATCAGCGCATTCATCAGTCAAACAACCCCGCTTATTCCCCGTGACGATGAAGATCGTGAAACCCAGCCC
ACACTGGGCTTCCAGCGGGTGCTGCAACGCGCCGTGTTCCATGTCCAATCATCGGGCAACACGGAAGTCAGTGGTGCCAA
CGTGCTGGTTGCCATTTTCAGCGAGCAGGAGTCCCAGGCCGCTTACTTCCTGAAAAAGGCCGAGATCAGCCGGCTGGATG
TGGTCAATTTCCTCTCCCATGGCGTGCGTAAAGACAGCAAGCCGGACAACAGCAGCAACAATGCCGAGTCCGACGACGAT
GTGTCTGCCGCCCAGATAGAAAGCTTTGCCACCAACCTCAATCAGCTGGTGCTGGAAGGGCGTATCGATCCGCTTATCGG
GCGGGATCAGGAGCTCAACCGTACCATCCAGGTGCTCTGCCGCCGTCGCAAGAACAACCCCTTGCTGGTCGGTGAAGCCG
GGGTGGGCAAGACGGCCATCGCTGAAGGGCTGGCTTATCGTATCGTCAAGGGTGATGTGCCCGAGGTGATTGCGGGCAGC
ACCATTTATTCTCTGGATATGGGCTCGCTGCTGGCGGGGACCAAGTATCGCGGTGATTTCGAGAAGCGTCTCAAGGTGCT
GCTCAAGCAGATCGAGCGCCAGGAAGGGGCGATCCTGTTCATCGACGAGATCCACACCATCATAGGGGCTGGTGCTGCCT
CCGGTGGTCAGCTGGATGCGGCCAACCTCATCAAGCCGCTGCTCTCCAATGGCTTGCTGCGTTGTGTCGGCTCCACCACC
TATCAGGAATACTCCCAGATCTTTGAGAAGGACCGTGCTCTGGCGCGTCGCTTCCAGAAGATCGATATCGTCGAGCCCAG
TGTGGACGACACCACCCGCATCCTGATGGGGCTCAAGAGCCGCTATGAGGCTCACCACGGGGTGCGCTACACCGTCAAGG
CCATCCGCGCAGCGGTGGAGCTCTCTGCCAAGTACATCAATGATCGCCATCTGCCTGACAAGGCGATCGACGTGATCGAC
GAAGCCGGTGCCGGGCAACGGCTGCTGCCGGCGAGCAAGCGCAAGAAAGTGATCAATGTGCAGGAGATCGAAGCCATTGT
GGCCAAGATTGCTCGCATCCCGGAGAAATCAGTCTCGTCTTCCGACAAGGAAGTGCTGAAGAATCTGGAGCGCAATCTCA
AGATGGTGGTATTTGGTCAGGACAAGGCCATCGAGGTGCTGACCGATTCCATTCGCTTGTCACGTTCGGGCTTGGGTAAT
GAGCGTCGCCCCGTGGGTTGCTTCCTGTTTGCCGGCCCGACCGGGGTGGGCAAGACCGAGGTCACTCAGCAGTTGGGCAA
GGCGCTCGGCGTCGAGGTGCTGCGCTTCGATATGTCGGAGTACATGGAACGCCACACCGTCTCTCGCCTGATCGGGGCAC
CTCCCGGCTATGTGGGCTTTGAGCAGGGTGGACTTCTGACCGATTCGGTACTCAAGCACCCGCACTCAGTGGTACTGCTG
GACGAGATCGAAAAAGCGCACCCGGATGTGTTCAACCTGCTGCTGCAGGTGATGGACAACGGCACCCTGACTGACAACAA
CGGGCGCAAGGCGGATTTTCGCAACGTGATCCTGGTGATGACCACCAACGCCGGCGTGCAGGAGACCCAGCGCAAGTCCA
TCGGCTTCCAGCAGCAGGATATGAGCCACGATGCCATGGCGGTGATCAACAAGACGTTCAGCCCGGAGTTTCGCAACCGG
CTCGATCACACCATCTGGTTCAACCATCTGGATATGCAGGTGATACATCAGGTGGTCGACAAGTTCATCGTCGAGTTGCA
GGTACAACTGGATGCCAAGGGCGTGTCTCTTGAAGTGTCCGAGGGTGTCCGCCACTGGTTGGCCGAGAAGGGATATGACA
GGGCCATGGGAGCGAGACCCATGGGGCGGGTCATCCAGGAACACCTCAAGAAACCCCTTGCCAATGAGATCCTGTTCGGG
TCCTTGGTCGATGGGGGGGTAGTGAAGGTTGAGTTGATAAATGACAGCCTCAGCTTTGACTATCAGGTCAATGTTGAAGC
TGTTTCCCACTAA