Detailed information of component protein


Summary

Component ID T6CP259506
Component protein type TssC
T6SS ID (Type) T6SS17501 experimental (Type i3)
Strain Neisseria cinerea isolate CCUG346T (346T)
Replicon chromosome
Sequence Protein sequence (500 a.a.); Nucleotide sequence (1500 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 28638..30137 (+)
NCBI ID -
GenBank 346T_plasmid
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.2e-136 70..372
VipB_2 PF18945.2 3e-44 382..493
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-499 MTEKQLDIQGDSGAKSVFAANEFEKLLQKEFKPKTEEAKSAVNNAVATLAQQALQNAITISDDTYQTIEAIIAELDRKLSEQINLILHHEDFQKLEGEWRGLHHLVTNTETDTLLKIKVLPISKKEVARNLKRFKGTAWDQSPLFKRIYEEEYGQFGGEPFGCLIGDYYFDHSAPDVEMLNSLEKIAAAAHCPFIAGASPKLMQMESWQELANPRDLSKIFQNAEYAPWRSLRDSEDSRYIGLALPRFLSRLPYGATTNPVDEFDFEEETEGADHNKYTWANAAYAMAVNINRSFKYYGWCTSIRGVESGGIVENLPCHTFPTDDGGVDMKCPTEIAISDRREAELAALGFMPLIHRKNTDLAAFIGAQSLHKPSEYYDPDATANARLSARLPYLFACCRFAHYLKCIVRDKVGSFREREDMERWLNEWIMNYVDGDPINSTQETKARKPLAAAEVVVEEVEDNPGYYTSKFFLRPHYQLEGLTVSLRLVSKLPSAKQE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9816 - -


  Protein sequence: 500 a.a.    

>T6CP259506 346T_plasmid:28638-30137 [synthetic DNA construct] [TssC]
MTEKQLDIQGDSGAKSVFAANEFEKLLQKEFKPKTEEAKSAVNNAVATLAQQALQNAITISDDTYQTIEAIIAELDRKLS
EQINLILHHEDFQKLEGEWRGLHHLVTNTETDTLLKIKVLPISKKEVARNLKRFKGTAWDQSPLFKRIYEEEYGQFGGEP
FGCLIGDYYFDHSAPDVEMLNSLEKIAAAAHCPFIAGASPKLMQMESWQELANPRDLSKIFQNAEYAPWRSLRDSEDSRY
IGLALPRFLSRLPYGATTNPVDEFDFEEETEGADHNKYTWANAAYAMAVNINRSFKYYGWCTSIRGVESGGIVENLPCHT
FPTDDGGVDMKCPTEIAISDRREAELAALGFMPLIHRKNTDLAAFIGAQSLHKPSEYYDPDATANARLSARLPYLFACCR
FAHYLKCIVRDKVGSFREREDMERWLNEWIMNYVDGDPINSTQETKARKPLAAAEVVVEEVEDNPGYYTSKFFLRPHYQL
EGLTVSLRLVSKLPSAKQE*

  Nucleotide sequence: 1500 bp    

>T6CP259506 346T_plasmid:28638-30137 [synthetic DNA construct] [TssC]
ATGACTGAAAAGCAATTAGATATCCAAGGGGATAGCGGCGCAAAAAGCGTATTCGCCGCGAATGAATTTGAAAAGCTACT
GCAAAAAGAATTCAAACCTAAAACCGAAGAAGCTAAAAGTGCCGTAAACAATGCTGTGGCAACTCTTGCCCAACAGGCCT
TGCAAAATGCCATTACTATTTCAGACGACACTTATCAAACTATCGAAGCAATTATTGCCGAGCTCGACAGAAAACTCTCC
GAACAGATCAATCTGATTCTACATCATGAAGATTTCCAAAAACTGGAAGGCGAATGGCGCGGTCTGCATCATTTGGTTAC
AAATACCGAAACTGATACTTTGTTGAAAATCAAGGTATTGCCAATCTCCAAAAAAGAAGTTGCCCGCAACTTAAAACGCT
TCAAAGGCACTGCTTGGGACCAAAGCCCCCTATTCAAACGTATTTATGAAGAAGAATATGGTCAATTTGGTGGCGAACCT
TTTGGCTGTTTGATTGGCGACTACTATTTTGACCACTCTGCACCCGATGTAGAAATGCTCAATAGTCTTGAAAAAATTGC
TGCCGCCGCACACTGCCCATTCATTGCCGGCGCATCTCCCAAATTAATGCAGATGGAGTCTTGGCAGGAATTGGCCAATC
CTCGTGATTTAAGCAAAATTTTCCAAAATGCCGAGTATGCCCCATGGCGCAGCCTGCGTGATTCCGAAGATTCGCGTTAT
ATCGGTTTGGCCCTGCCACGTTTCTTATCCCGTCTGCCTTACGGTGCCACGACAAATCCTGTCGATGAGTTTGACTTCGA
AGAAGAAACTGAAGGCGCGGATCACAACAAATACACATGGGCCAATGCGGCTTATGCAATGGCGGTAAATATTAACCGTT
CATTCAAATATTATGGTTGGTGTACCTCAATCCGCGGCGTGGAATCCGGCGGTATCGTTGAGAACCTTCCCTGCCACACC
TTCCCGACGGATGACGGCGGCGTGGATATGAAATGTCCAACCGAAATCGCCATCAGCGACCGCCGCGAGGCCGAATTGGC
AGCATTGGGATTCATGCCGTTGATTCACCGTAAAAATACCGACTTGGCTGCGTTTATTGGTGCTCAATCGCTGCATAAAC
CGTCTGAATATTATGATCCAGATGCCACGGCTAACGCCCGCTTGTCTGCGCGTCTGCCTTACCTGTTTGCGTGCTGCCGT
TTCGCCCACTATCTGAAATGTATCGTACGCGACAAGGTCGGTTCATTCCGCGAGCGTGAAGACATGGAACGTTGGTTAAA
CGAATGGATTATGAATTATGTAGATGGAGACCCAATTAACTCCACTCAAGAAACAAAAGCCCGTAAACCGTTGGCTGCTG
CTGAAGTGGTTGTGGAAGAAGTTGAAGACAATCCTGGATATTACACTTCCAAATTCTTCCTACGTCCGCACTACCAACTC
GAAGGCCTTACTGTTTCATTGCGCTTGGTTTCCAAACTGCCTTCGGCTAAACAGGAATAG