Detailed information of component protein
Summary
| Component ID | T6CP259505 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS17501  (Type i3) |
| Strain | Neisseria cinerea isolate CCUG346T (346T) |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 28086..28604 (+) |
| NCBI ID | - |
| GenBank | 346T_plasmid |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 7.9e-57 | 13..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MSRNKSSGQKFIARNRAPRVQIEYDVELYGSEKKIELPFVMGVMADLVGKPVEPLPELAERKFLEIDVDNFDERMKALKPRVAFNVKNTLTGEGNLNVELELESMDDFSPAAIAKKVGPLKELLQARTELANLLSYMDGKSGAEELIGKVLGDSELLKSLAAAPKAASKDEQ |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9963 | - | - |
Protein sequence: 173 a.a.
>T6CP259505 346T_plasmid:28086-28604 [synthetic DNA construct] [TssB]
MSRNKSSGQKFIARNRAPRVQIEYDVELYGSEKKIELPFVMGVMADLVGKPVEPLPELAERKFLEIDVDNFDERMKALKP
RVAFNVKNTLTGEGNLNVELELESMDDFSPAAIAKKVGPLKELLQARTELANLLSYMDGKSGAEELIGKVLGDSELLKSL
AAAPKAASKDEQ*
MSRNKSSGQKFIARNRAPRVQIEYDVELYGSEKKIELPFVMGVMADLVGKPVEPLPELAERKFLEIDVDNFDERMKALKP
RVAFNVKNTLTGEGNLNVELELESMDDFSPAAIAKKVGPLKELLQARTELANLLSYMDGKSGAEELIGKVLGDSELLKSL
AAAPKAASKDEQ*
Nucleotide sequence: 519 bp
>T6CP259505 346T_plasmid:28086-28604 [synthetic DNA construct] [TssB]
ATGTCACGAAACAAATCATCCGGACAAAAATTTATTGCCCGCAACCGGGCCCCTCGCGTACAGATTGAGTACGATGTAGA
ACTTTACGGCTCTGAGAAAAAAATTGAGCTTCCATTCGTTATGGGTGTGATGGCAGATTTGGTCGGCAAACCTGTGGAAC
CACTGCCCGAATTGGCCGAACGCAAATTTTTGGAAATTGACGTAGATAATTTCGATGAGCGTATGAAAGCCCTCAAACCT
CGTGTGGCATTTAATGTAAAAAATACGCTTACCGGTGAAGGCAATCTGAATGTAGAGCTTGAATTGGAAAGCATGGATGA
TTTCTCTCCGGCAGCAATCGCCAAAAAGGTAGGTCCTTTAAAGGAACTCCTACAAGCTCGCACAGAGCTTGCCAACCTGC
TTTCATATATGGATGGTAAGAGTGGTGCTGAAGAATTAATCGGAAAAGTCTTGGGAGACAGCGAGCTGCTGAAAAGCCTT
GCAGCTGCGCCTAAAGCGGCTTCCAAAGACGAGCAGTAA
ATGTCACGAAACAAATCATCCGGACAAAAATTTATTGCCCGCAACCGGGCCCCTCGCGTACAGATTGAGTACGATGTAGA
ACTTTACGGCTCTGAGAAAAAAATTGAGCTTCCATTCGTTATGGGTGTGATGGCAGATTTGGTCGGCAAACCTGTGGAAC
CACTGCCCGAATTGGCCGAACGCAAATTTTTGGAAATTGACGTAGATAATTTCGATGAGCGTATGAAAGCCCTCAAACCT
CGTGTGGCATTTAATGTAAAAAATACGCTTACCGGTGAAGGCAATCTGAATGTAGAGCTTGAATTGGAAAGCATGGATGA
TTTCTCTCCGGCAGCAATCGCCAAAAAGGTAGGTCCTTTAAAGGAACTCCTACAAGCTCGCACAGAGCTTGCCAACCTGC
TTTCATATATGGATGGTAAGAGTGGTGCTGAAGAATTAATCGGAAAAGTCTTGGGAGACAGCGAGCTGCTGAAAAGCCTT
GCAGCTGCGCCTAAAGCGGCTTCCAAAGACGAGCAGTAA