Detailed information of component protein
Summary
Component ID | T6CP259504 |
Component protein type | TssA |
T6SS ID (Type) | T6SS17501 (Type i3) |
Strain | Neisseria cinerea isolate CCUG346T (346T) |
Replicon | chromosome |
Sequence | Protein sequence (356 a.a.); Nucleotide sequence (1068 bp) |
Reference |
External database links
Locus tag (Gene) | - |
Coordinate (Strand) | 26951..28018 (+) |
NCBI ID | - |
GenBank | 346T_plasmid |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
ImpA_N | PF06812.14 | 7.2e-31 | 9..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-355 | MSTFPLWAEPISADIPEGVNIEYDSRFLELQSAAEGKPERQYGDTIIPAEEPDWATVEKLCNQLLAESKDLHVLAYYTQALTAKHGLVGFCAGCEAIKTNVDLYWKSLYPKLEDEDGESDPFYRINALSAFTTLDGIAKEVFSAKLLVNGLTQQPITVKEAVSVLQGNDPQSYPGGKERLMLDIRVSADTGKPELIALIQALDHLKDIQNTFSTQLQDEHSLNFEVIQKPLTLIHKAINYNDGSTPQLQHAEQTEQPAETPVSTVAQEQSTLQEADAWRRLNIKNRADVDLALEKICIYFETLEPSHPAPLFIRRVQRQMNMNFYDIMKDISPESIANLEVLIGKPDEETGTSNE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9120 | - | - |
Protein sequence: 356 a.a.
>T6CP259504 346T_plasmid:26951-28018 [synthetic DNA construct] [TssA]
MSTFPLWAEPISADIPEGVNIEYDSRFLELQSAAEGKPERQYGDTIIPAEEPDWATVEKLCNQLLAESKDLHVLAYYTQA
LTAKHGLVGFCAGCEAIKTNVDLYWKSLYPKLEDEDGESDPFYRINALSAFTTLDGIAKEVFSAKLLVNGLTQQPITVKE
AVSVLQGNDPQSYPGGKERLMLDIRVSADTGKPELIALIQALDHLKDIQNTFSTQLQDEHSLNFEVIQKPLTLIHKAINY
NDGSTPQLQHAEQTEQPAETPVSTVAQEQSTLQEADAWRRLNIKNRADVDLALEKICIYFETLEPSHPAPLFIRRVQRQM
NMNFYDIMKDISPESIANLEVLIGKPDEETGTSNE*
MSTFPLWAEPISADIPEGVNIEYDSRFLELQSAAEGKPERQYGDTIIPAEEPDWATVEKLCNQLLAESKDLHVLAYYTQA
LTAKHGLVGFCAGCEAIKTNVDLYWKSLYPKLEDEDGESDPFYRINALSAFTTLDGIAKEVFSAKLLVNGLTQQPITVKE
AVSVLQGNDPQSYPGGKERLMLDIRVSADTGKPELIALIQALDHLKDIQNTFSTQLQDEHSLNFEVIQKPLTLIHKAINY
NDGSTPQLQHAEQTEQPAETPVSTVAQEQSTLQEADAWRRLNIKNRADVDLALEKICIYFETLEPSHPAPLFIRRVQRQM
NMNFYDIMKDISPESIANLEVLIGKPDEETGTSNE*
Nucleotide sequence: 1068 bp
>T6CP259504 346T_plasmid:26951-28018 [synthetic DNA construct] [TssA]
ATGAGTACATTTCCCCTATGGGCTGAACCAATTTCCGCAGACATCCCTGAAGGAGTAAATATTGAATACGATAGCCGCTT
TTTAGAGCTTCAAAGCGCTGCCGAAGGAAAACCGGAACGTCAATATGGTGACACCATCATCCCTGCGGAAGAACCTGATT
GGGCTACAGTAGAGAAGCTATGCAATCAACTGCTGGCTGAATCAAAAGACCTCCATGTTTTAGCCTATTACACACAGGCT
CTTACCGCAAAACACGGGCTGGTTGGCTTTTGCGCCGGCTGCGAAGCCATCAAAACCAATGTGGATTTATATTGGAAATC
CCTATATCCCAAACTCGAAGATGAGGACGGCGAATCCGACCCGTTTTATCGAATCAATGCATTAAGTGCGTTCACGACAC
TTGATGGCATCGCCAAAGAAGTATTTTCAGCTAAATTATTAGTAAACGGACTGACCCAACAGCCTATTACCGTTAAAGAA
GCAGTTTCTGTCTTGCAAGGCAATGACCCTCAAAGTTATCCGGGCGGCAAAGAACGTTTGATGCTCGATATCAGGGTAAG
TGCCGATACCGGCAAACCGGAATTGATTGCCTTAATCCAGGCATTAGACCATCTGAAAGATATTCAAAACACTTTCTCGA
CCCAGCTGCAAGACGAACACTCACTCAATTTTGAAGTGATTCAAAAACCGCTTACCCTGATCCACAAAGCCATCAATTAC
AATGATGGAAGTACCCCGCAGCTGCAACATGCTGAACAAACGGAACAACCCGCTGAAACGCCCGTTTCGACCGTTGCTCA
AGAGCAATCGACCCTTCAAGAAGCGGATGCATGGCGTCGTCTGAATATCAAAAATCGGGCTGATGTCGATTTGGCTTTGG
AAAAAATCTGCATTTACTTTGAAACGCTGGAACCCAGCCACCCTGCCCCACTATTTATCCGTAGGGTACAGCGACAAATG
AATATGAACTTCTACGACATCATGAAAGATATTAGTCCTGAAAGCATTGCCAATCTGGAAGTTTTGATCGGTAAGCCTGA
CGAAGAAACTGGAACCTCCAACGAATAA
ATGAGTACATTTCCCCTATGGGCTGAACCAATTTCCGCAGACATCCCTGAAGGAGTAAATATTGAATACGATAGCCGCTT
TTTAGAGCTTCAAAGCGCTGCCGAAGGAAAACCGGAACGTCAATATGGTGACACCATCATCCCTGCGGAAGAACCTGATT
GGGCTACAGTAGAGAAGCTATGCAATCAACTGCTGGCTGAATCAAAAGACCTCCATGTTTTAGCCTATTACACACAGGCT
CTTACCGCAAAACACGGGCTGGTTGGCTTTTGCGCCGGCTGCGAAGCCATCAAAACCAATGTGGATTTATATTGGAAATC
CCTATATCCCAAACTCGAAGATGAGGACGGCGAATCCGACCCGTTTTATCGAATCAATGCATTAAGTGCGTTCACGACAC
TTGATGGCATCGCCAAAGAAGTATTTTCAGCTAAATTATTAGTAAACGGACTGACCCAACAGCCTATTACCGTTAAAGAA
GCAGTTTCTGTCTTGCAAGGCAATGACCCTCAAAGTTATCCGGGCGGCAAAGAACGTTTGATGCTCGATATCAGGGTAAG
TGCCGATACCGGCAAACCGGAATTGATTGCCTTAATCCAGGCATTAGACCATCTGAAAGATATTCAAAACACTTTCTCGA
CCCAGCTGCAAGACGAACACTCACTCAATTTTGAAGTGATTCAAAAACCGCTTACCCTGATCCACAAAGCCATCAATTAC
AATGATGGAAGTACCCCGCAGCTGCAACATGCTGAACAAACGGAACAACCCGCTGAAACGCCCGTTTCGACCGTTGCTCA
AGAGCAATCGACCCTTCAAGAAGCGGATGCATGGCGTCGTCTGAATATCAAAAATCGGGCTGATGTCGATTTGGCTTTGG
AAAAAATCTGCATTTACTTTGAAACGCTGGAACCCAGCCACCCTGCCCCACTATTTATCCGTAGGGTACAGCGACAAATG
AATATGAACTTCTACGACATCATGAAAGATATTAGTCCTGAAAGCATTGCCAATCTGGAAGTTTTGATCGGTAAGCCTGA
CGAAGAAACTGGAACCTCCAACGAATAA