Detailed information of component protein


Summary

Component ID T6CP259504
Component protein type TssA
T6SS ID (Type) T6SS17501 experimental (Type i3)
Strain Neisseria cinerea isolate CCUG346T (346T)
Replicon chromosome
Sequence Protein sequence (356 a.a.); Nucleotide sequence (1068 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 26951..28018 (+)
NCBI ID -
GenBank 346T_plasmid
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 7.2e-31 9..131

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-355 MSTFPLWAEPISADIPEGVNIEYDSRFLELQSAAEGKPERQYGDTIIPAEEPDWATVEKLCNQLLAESKDLHVLAYYTQALTAKHGLVGFCAGCEAIKTNVDLYWKSLYPKLEDEDGESDPFYRINALSAFTTLDGIAKEVFSAKLLVNGLTQQPITVKEAVSVLQGNDPQSYPGGKERLMLDIRVSADTGKPELIALIQALDHLKDIQNTFSTQLQDEHSLNFEVIQKPLTLIHKAINYNDGSTPQLQHAEQTEQPAETPVSTVAQEQSTLQEADAWRRLNIKNRADVDLALEKICIYFETLEPSHPAPLFIRRVQRQMNMNFYDIMKDISPESIANLEVLIGKPDEETGTSNE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9120 - -



  Protein sequence: 356 a.a.    

>T6CP259504 346T_plasmid:26951-28018 [synthetic DNA construct] [TssA]
MSTFPLWAEPISADIPEGVNIEYDSRFLELQSAAEGKPERQYGDTIIPAEEPDWATVEKLCNQLLAESKDLHVLAYYTQA
LTAKHGLVGFCAGCEAIKTNVDLYWKSLYPKLEDEDGESDPFYRINALSAFTTLDGIAKEVFSAKLLVNGLTQQPITVKE
AVSVLQGNDPQSYPGGKERLMLDIRVSADTGKPELIALIQALDHLKDIQNTFSTQLQDEHSLNFEVIQKPLTLIHKAINY
NDGSTPQLQHAEQTEQPAETPVSTVAQEQSTLQEADAWRRLNIKNRADVDLALEKICIYFETLEPSHPAPLFIRRVQRQM
NMNFYDIMKDISPESIANLEVLIGKPDEETGTSNE*

  Nucleotide sequence: 1068 bp    

>T6CP259504 346T_plasmid:26951-28018 [synthetic DNA construct] [TssA]
ATGAGTACATTTCCCCTATGGGCTGAACCAATTTCCGCAGACATCCCTGAAGGAGTAAATATTGAATACGATAGCCGCTT
TTTAGAGCTTCAAAGCGCTGCCGAAGGAAAACCGGAACGTCAATATGGTGACACCATCATCCCTGCGGAAGAACCTGATT
GGGCTACAGTAGAGAAGCTATGCAATCAACTGCTGGCTGAATCAAAAGACCTCCATGTTTTAGCCTATTACACACAGGCT
CTTACCGCAAAACACGGGCTGGTTGGCTTTTGCGCCGGCTGCGAAGCCATCAAAACCAATGTGGATTTATATTGGAAATC
CCTATATCCCAAACTCGAAGATGAGGACGGCGAATCCGACCCGTTTTATCGAATCAATGCATTAAGTGCGTTCACGACAC
TTGATGGCATCGCCAAAGAAGTATTTTCAGCTAAATTATTAGTAAACGGACTGACCCAACAGCCTATTACCGTTAAAGAA
GCAGTTTCTGTCTTGCAAGGCAATGACCCTCAAAGTTATCCGGGCGGCAAAGAACGTTTGATGCTCGATATCAGGGTAAG
TGCCGATACCGGCAAACCGGAATTGATTGCCTTAATCCAGGCATTAGACCATCTGAAAGATATTCAAAACACTTTCTCGA
CCCAGCTGCAAGACGAACACTCACTCAATTTTGAAGTGATTCAAAAACCGCTTACCCTGATCCACAAAGCCATCAATTAC
AATGATGGAAGTACCCCGCAGCTGCAACATGCTGAACAAACGGAACAACCCGCTGAAACGCCCGTTTCGACCGTTGCTCA
AGAGCAATCGACCCTTCAAGAAGCGGATGCATGGCGTCGTCTGAATATCAAAAATCGGGCTGATGTCGATTTGGCTTTGG
AAAAAATCTGCATTTACTTTGAAACGCTGGAACCCAGCCACCCTGCCCCACTATTTATCCGTAGGGTACAGCGACAAATG
AATATGAACTTCTACGACATCATGAAAGATATTAGTCCTGAAAGCATTGCCAATCTGGAAGTTTTGATCGGTAAGCCTGA
CGAAGAAACTGGAACCTCCAACGAATAA