Detailed information of component protein


Summary

Component ID T6CP210290
Component protein type TssC
T6SS ID (Type) T6SS14098 experimental (Type i2)
Strain Enterobacter cloacae strain DSM 30054
Replicon chromosome
Sequence Protein sequence (514 a.a.); Nucleotide sequence (1542 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ16_RS21075
Coordinate (Strand) 4305573..4307114 (+)
NCBI ID WP_044159362.1
RefSeq NZ_CP056776
Uniprot ID UPI000505521E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.3e-120 86..386
VipB_2 PF18945.2 3.4e-39 396..506
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-513 MSVNTENGSAQGQTTVLEKESVYASLFDKINLTPATSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKLDKTLIDHHIAELDFQISRQLDAVMHHAEFQKVESLWRGLKQLVDNTDYRQNVKTEILDVSKDDLRQDFEDAPELIQSGLYWHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISKVSAAAHMPFIGAVGPKFFLKESMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGFFRVKLFAVPHFQVEGMDVNLSLVSQMPKAKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -


  Protein sequence: 514 a.a.    

>T6CP210290 NZ_CP056776:4305573-4307114 [Enterobacter cloacae] [TssC]
MSVNTENGSAQGQTTVLEKESVYASLFDKINLTPATSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKL
DKTLIDHHIAELDFQISRQLDAVMHHAEFQKVESLWRGLKQLVDNTDYRQNVKTEILDVSKDDLRQDFEDAPELIQSGLY
WHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISKVSAAAHMPFIGAVGPKFFLKESMEEVAAIKDIGNYFDRAE
YIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIR
GPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANS
RINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGF
FRVKLFAVPHFQVEGMDVNLSLVSQMPKAKAKA*

  Nucleotide sequence: 1542 bp    

>T6CP210290 NZ_CP056776:4305573-4307114 [Enterobacter cloacae] [TssC]
ATGTCTGTTAATACTGAAAATGGCTCCGCGCAGGGGCAGACCACTGTGCTGGAAAAAGAGAGCGTCTACGCCTCCCTGTT
CGACAAAATCAACCTGACCCCGGCCACAAGCCTGGGCGATATCAATGCGTTTCTGGACGATGCCGCACTGTCTGATGCTC
CGGCAGGTGAGCGCCTGACAGCGGCAATGCAGGTATTTATGGACTGCATCCGCAAATCCGGCCAGCCAGTGGAAAAACTC
GATAAAACCCTGATTGACCACCATATCGCGGAGCTGGATTTCCAAATCAGCCGCCAGCTGGATGCGGTGATGCATCATGC
AGAATTCCAGAAAGTGGAATCCCTGTGGCGCGGCCTGAAGCAACTGGTGGACAACACCGACTACCGCCAGAATGTAAAAA
CGGAAATTCTGGATGTGTCCAAAGACGACCTGCGCCAGGACTTCGAAGATGCGCCGGAACTTATCCAGAGCGGCCTGTAC
TGGCACACCTATACCGCTGAATACGACACCCCGGGCGGCGAGCCGATTGGCTCGGTTATTTCAGCGTACGAATTTGACGC
AAGTCCGCAGGACGTGGCGCTGTTGCGCAATATCTCGAAAGTCTCTGCCGCCGCGCATATGCCGTTTATTGGTGCCGTCG
GGCCGAAATTCTTCCTCAAGGAATCGATGGAAGAGGTGGCCGCGATTAAGGACATCGGTAACTACTTCGACCGTGCCGAA
TACATCAAATGGAAATCCTTCCGCGACACCGACGATGCCCGTTATATCGGCCTGGTGATGCCGCGCGTGCTGGGGCGCCT
GCCTTACGGCCCGGACACGGTGCCGGTGCGCAGTTTCAACTACGTTGAGCAGGTGAAAGGTCCGGACCACGAAAAATACC
TGTGGACAAGCGCATCTTTCTCCTTCGCCTCCAACATGGTGAAGAGCTTCATCAACAACGGCTGGTGCGTGCAAATTCGT
GGCCCGCAGGCAGGTGGGGCCGTGAAAGACCTGCCGATCCACCTGTACGATCTGGGTACCGGCAACCAGGTGAAGATCCC
GTCAGAGGTGATGATCCCGGAAACCCGCGAGTTTGAATTCGCTAACCTGGGCTTTATACCGCTGTCGTACTACAAGAACC
GTGATTACGCCTGCTTCTTCTCGGCGAACTCGGCGCAGAAACCGGCGCTGTACGACACCGCCGACGCCACTGCCAACAGC
CGCATCAATGCCCGTCTGCCGTATATCTTCCTGCTGTCGCGCATTGCGCATTACCTGAAGCTGATTCAGCGCGAAAATAT
CGGTACGACGAAAGATCGCCGTCTGCTGGAGCTGGAACTCAATACATGGGTACGCAGTCTGGTGACCGAAATGACCGATC
CGGGCGACGAACTGCAGGCCTCACACCCGCTGCGCGATGCGAAGGTGGTGGTGGAAGATATTGAGGACAACCCGGGCTTC
TTCCGCGTGAAGCTGTTCGCGGTGCCGCACTTCCAGGTGGAAGGCATGGACGTGAACCTGTCGCTGGTGAGCCAGATGCC
GAAAGCGAAAGCGAAAGCGTAA