Detailed information of component protein


Summary

Component ID T6CP210279
Component protein type TssF
T6SS ID (Type) T6SS14097 experimental (Type i3)
Strain Enterobacter cloacae strain DSM 30054
Replicon chromosome
Sequence Protein sequence (624 a.a.); Nucleotide sequence (1872 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ16_RS19780
Coordinate (Strand) 4054803..4056674 (+)
NCBI ID WP_038420938.1
RefSeq NZ_CP056776
Uniprot ID A0A421IIF9_ENTCL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.4e-219 3..620
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-623 VESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYTERLMEGFAFLTSRVQMKMDAEFPRFSQRLLEMIAPNYLAPTPSMAIAEIQPDSSRGDLSNGFIVPRGTMMDSLALKKTGVTCSYTTAHEVNLLPLKIDKVELGGVPADLPLTQLGLGQQGISSALRIRIACDGPQNLGHLDFDRLEFFLSGPDIEALKLLELVMEHHVGVVCQTVSKHPQRDVLASDALRQEGFDADQSLLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLSKLIQRCENEKAFDIFILLDKTDEQLERVVDASHLALHCTPVINLFPKVAARQKLSEGQHEYHLVVDNIRPLDYEIYAVNKIYGSADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHALRYGTRTGYIGSEVFVSLVDEQHAPWQENLRYISAEVLCTSRDLPLMLQQELGQFIMADSMPVKSLTLRKGPTPPRPALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAETPVARQVEGVRHCVLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVLERLFARLVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9948 - -


  Protein sequence: 624 a.a.    

>T6CP210279 NZ_CP056776:4054803-4056674 [Enterobacter cloacae] [TssF]
VESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYTERLMEGFAFLTSRVQMKMDAEFPRFSQRLLEMIA
PNYLAPTPSMAIAEIQPDSSRGDLSNGFIVPRGTMMDSLALKKTGVTCSYTTAHEVNLLPLKIDKVELGGVPADLPLTQL
GLGQQGISSALRIRIACDGPQNLGHLDFDRLEFFLSGPDIEALKLLELVMEHHVGVVCQTVSKHPQRDVLASDALRQEGF
DADQSLLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLSKLIQRCENEKAFDIFILLDKTDEQLERVVDASHLALHCTPV
INLFPKVAARQKLSEGQHEYHLVVDNIRPLDYEIYAVNKIYGSADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVL
SEHALRYGTRTGYIGSEVFVSLVDEQHAPWQENLRYISAEVLCTSRDLPLMLQQELGQFIMADSMPVKSLTLRKGPTPPR
PALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAETPVARQVEGVRHCVLEPVHRRVPEPGPVVFARG
IGITLTVDERAFSGASPWLFGSVLERLFARLVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV*

  Nucleotide sequence: 1872 bp    

>T6CP210279 NZ_CP056776:4054803-4056674 [Enterobacter cloacae] [TssF]
GTGGAAAGTAAACTGCTCGAATATTACAACCGTGAGCTGGCCTATCTGCGTGAGATGGGCGCCGAATTTGCCGAGCGCTA
TCCCAAAGTGGCCGGACGGCTGGGCATGCGCGGCATCGAAGTGGCGGATCCGTACACCGAACGACTGATGGAGGGCTTTG
CCTTTCTGACCTCGCGCGTGCAGATGAAAATGGACGCGGAGTTTCCGCGCTTCTCCCAGCGCTTGCTGGAGATGATTGCG
CCGAACTATCTCGCGCCCACTCCGTCCATGGCGATTGCTGAAATTCAGCCTGACAGCAGCCGTGGCGATTTGAGCAACGG
TTTTATCGTGCCACGCGGCACAATGATGGACAGCCTGGCGCTGAAGAAAACCGGCGTGACCTGCAGCTACACCACGGCGC
ATGAGGTGAACCTGCTGCCGCTGAAAATCGACAAGGTTGAGCTGGGCGGTGTGCCTGCCGACCTGCCCCTGACACAGCTT
GGTCTGGGCCAGCAGGGGATCAGCAGCGCCTTACGGATCCGCATTGCCTGCGACGGTCCGCAAAACCTCGGCCACCTTGA
TTTTGACCGGCTGGAGTTTTTCCTTAGTGGCCCGGATATCGAGGCGTTAAAGCTGCTGGAGCTGGTAATGGAGCACCATG
TCGGGGTGGTCTGCCAGACCGTCAGCAAACATCCGCAGCGTGATGTGCTGGCGTCTGATGCCCTGCGTCAGGAAGGGTTT
GACGCGGATCAGTCGCTACTCCCGGACGATCTGCGCAACTTTGACGGCTACCGTCTGTTGCAGGAGTACTTTGCTTTTCC
GGCCCGTTTCCGCTTCATCAGCCTGAGCGGGCTGAGCAAACTGATCCAGCGCTGCGAAAACGAAAAAGCCTTCGATATCT
TCATTCTGCTGGATAAAACCGATGAACAGCTGGAGCGCGTTGTCGATGCCAGCCATCTGGCCCTGCACTGCACGCCAGTG
ATCAACCTGTTCCCGAAGGTAGCGGCGCGTCAGAAGCTGAGCGAAGGCCAGCATGAATACCATCTGGTGGTGGATAACAT
CCGCCCGCTGGATTATGAAATTTACGCGGTAAACAAGATATACGGCAGTGCGGATGGTCAGCGCGACGACCAGACGTTTC
GTCCGTTCTGGAGCACCTGGAGCGGCGATGCAGGCAACTACGGGGCCTACTTTTCCCTGCGCCGGGAACAACGCGTGCTC
TCTGAGCACGCCCTGCGTTACGGCACCCGCACCGGCTACATTGGCTCAGAGGTCTTTGTCTCGCTGGTGGATGAGCAGCA
TGCACCCTGGCAGGAGAACCTGCGCTATATCTCCGCCGAGGTGCTGTGCACCAGCCGGGATCTGCCGCTGATGCTGCAGC
AGGAGCTGGGACAGTTCATTATGGCTGACTCCATGCCGGTGAAGTCGCTGACCTTGCGTAAGGGGCCGACGCCGCCGCGT
CCGGCGCTGGCAGAAGGGTTCAGCACCTGGCGGTTGATCAGCCAGCTACAGATGAACTACCTCAGCCTGATGGACAGTGA
AAACGAAGAGGGCGCCGCCGCGCTGCGTCAGCTGTTAGGGCTGTACGCCAATCTCGCGGAGACGCCGGTTGCGCGTCAGG
TAGAAGGGGTTCGTCACTGCGTGCTGGAGCCGGTTCACCGCCGCGTGCCCGAGCCGGGACCGGTCGTCTTCGCCCGTGGC
ATCGGCATTACCCTGACGGTGGATGAACGTGCGTTTTCCGGTGCCAGTCCCTGGCTTTTCGGTAGCGTGCTGGAGCGGCT
GTTTGCCCGTCTGGTGTCGATCAACAGCTTCACGGAATTCACCCTGAAAAGTCAGCAGCGCGGCGAGATCGGCTACTGGG
CGCCGCGTATGGGCAAAAGGGCACTGGTATGA