Detailed information of component protein
Summary
| Component ID | T6CP210274 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS14097  (Type i3) |
| Strain | Enterobacter cloacae strain DSM 30054 |
| Replicon | chromosome |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | HWQ16_RS19740 |
| Coordinate (Strand) | 4048386..4048868 (+) |
| NCBI ID | WP_008502640.1 |
| RefSeq | NZ_CP056776 |
| Uniprot ID | W7PMH0_9ENTR, A0A0J6QBZ6_9ENTR, A0A1S2AGP3_9ENTR, A0A1M5IMD7_9GAMM, A0A1Z3MVW2_9ENTR, A0A4P6Y289_9ENTR, A0A0F1B2S9_9ENTR, A0A2S4SQA5_9ENTR, A0A5E1AC95_9ENTR, A0A2U3F0D5_9ENTR, A0A3A3ZFR4_9ENTR, A0A126PNA0_ENTCL, A0A331GJG2_KLEPN, A0A0E3AAP6_ENTAS, A0A1J5WMM3_9ENTR, A0A0H3CHH7_ENTCC, A0A2J7S2P4_9ENTR |
| KEGG ID | ern:BFV67_12850, lni:CWR52_21975, ecls:LI67_012800, eclg:EC036_26020, enc:ECL_01541 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 7.7e-37 | 6..131 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLTKVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9458 | - | - |
Protein sequence: 161 a.a.
>T6CP210274 NZ_CP056776:4048386-4048868 [Enterobacter cloacae] [TssD]
MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLT
KVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA
*
MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLT
KVELSVCKAGGQQVEYSRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTSGGKGAESSAGWNIKENKEA
*
Nucleotide sequence: 483 bp
>T6CP210274 NZ_CP056776:4048386-4048868 [Enterobacter cloacae] [TssD]
ATGGCTATTGATATGTTTCTGAAGGTCGAGGGTGTTACGGGCGAATCTAAAGATTCTAACCACACCGGCTGGACTGATAT
TACCTCCTTCTCCTGGGGCGCTTCCCAGCCAGGTAATATGAGCGTTGGCGGTGGCGGCGGTGCCGGTAAAGTTAACTTTA
ACGATCTGCACGTTAACGCTCTGATCGACAAATCCACCACAGCAATTCTGAAACACTGCGCCAGCGGTAAACACCTGACC
AAAGTTGAGCTGTCCGTCTGTAAAGCCGGTGGCCAGCAGGTGGAATACTCTCGCATTACCCTGGAAGACGTTCTGGTAAC
GTCTGTTCAGTACACCGGTGCAGACAACGGCGATACCGTTGGTGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGACCACCTCTGGTGGTAAAGGTGCTGAAAGCAGCGCTGGCTGGAACATCAAAGAAAACAAAGAAGCA
TAA
ATGGCTATTGATATGTTTCTGAAGGTCGAGGGTGTTACGGGCGAATCTAAAGATTCTAACCACACCGGCTGGACTGATAT
TACCTCCTTCTCCTGGGGCGCTTCCCAGCCAGGTAATATGAGCGTTGGCGGTGGCGGCGGTGCCGGTAAAGTTAACTTTA
ACGATCTGCACGTTAACGCTCTGATCGACAAATCCACCACAGCAATTCTGAAACACTGCGCCAGCGGTAAACACCTGACC
AAAGTTGAGCTGTCCGTCTGTAAAGCCGGTGGCCAGCAGGTGGAATACTCTCGCATTACCCTGGAAGACGTTCTGGTAAC
GTCTGTTCAGTACACCGGTGCAGACAACGGCGATACCGTTGGTGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGACCACCTCTGGTGGTAAAGGTGCTGAAAGCAGCGCTGGCTGGAACATCAAAGAAAACAAAGAAGCA
TAA