Detailed information of component protein
Summary
Component ID | T6CP210273 |
Component protein type | TssC |
T6SS ID (Type) | T6SS14097 (Type i3) |
Strain | Enterobacter cloacae strain DSM 30054 |
Replicon | chromosome |
Sequence | Protein sequence (500 a.a.); Nucleotide sequence (1500 bp) |
Reference |
External database links
Locus tag (Gene) | HWQ16_RS19735 |
Coordinate (Strand) | 4046551..4048050 (+) |
NCBI ID | WP_013096181.1 |
RefSeq | NZ_CP056776 |
Uniprot ID | A0A0F0UYG7_9ENTR, A0A0F1B007_9ENTR, A0A5E1ACS3_9ENTR, A0A1B3F241_ENTCL, A0A331GPM4_KLEPN, A0A0H3CGU5_ENTCC |
KEGG ID | ecls:LI67_012785, eclg:EC036_26030, enc:ECL_01540 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 8.5e-137 | 68..370 |
VipB_2 | PF18945.2 | 2e-44 | 380..491 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-499 | MSNQTQQHEQQAGQAFSQDEFSALLNKEFRPKTDQARSAVESAVKTLAQQALENTVTFSNDTYRTIQNLIAGIDEQLSQQVNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKIYEQEYGQFGGEPFGCIVGDYYFDHSPQDVELLGEMARIGSAAHCPFITGTAPGVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLGLVMPRFLSRLPYGIRTNPVDSFDFEEQTDGANHNSYAWANAAYAMAANINRSFKEYGWCTSIRGVESGGAVENLPCHTFPSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYHDPDATANARLASRLPYLFACCRFAHYLKCIVRDKIGSFREREEMERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKTKDA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9738 | - | - |
Protein sequence: 500 a.a.
>T6CP210273 NZ_CP056776:4046551-4048050 [Enterobacter cloacae] [TssC]
MSNQTQQHEQQAGQAFSQDEFSALLNKEFRPKTDQARSAVESAVKTLAQQALENTVTFSNDTYRTIQNLIAGIDEQLSQQ
VNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKIYEQEYGQFGGEPFG
CIVGDYYFDHSPQDVELLGEMARIGSAAHCPFITGTAPGVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLG
LVMPRFLSRLPYGIRTNPVDSFDFEEQTDGANHNSYAWANAAYAMAANINRSFKEYGWCTSIRGVESGGAVENLPCHTFP
SDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYHDPDATANARLASRLPYLFACCRFA
HYLKCIVRDKIGSFREREEMERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLEG
LTVSLRLVSKLPSLKTKDA*
MSNQTQQHEQQAGQAFSQDEFSALLNKEFRPKTDQARSAVESAVKTLAQQALENTVTFSNDTYRTIQNLIAGIDEQLSQQ
VNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKIYEQEYGQFGGEPFG
CIVGDYYFDHSPQDVELLGEMARIGSAAHCPFITGTAPGVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLG
LVMPRFLSRLPYGIRTNPVDSFDFEEQTDGANHNSYAWANAAYAMAANINRSFKEYGWCTSIRGVESGGAVENLPCHTFP
SDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYHDPDATANARLASRLPYLFACCRFA
HYLKCIVRDKIGSFREREEMERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLEG
LTVSLRLVSKLPSLKTKDA*
Nucleotide sequence: 1500 bp
>T6CP210273 NZ_CP056776:4046551-4048050 [Enterobacter cloacae] [TssC]
ATGAGCAACCAGACTCAACAACACGAGCAGCAGGCAGGTCAGGCGTTCAGTCAGGACGAGTTCAGCGCACTGCTGAACAA
AGAGTTCCGTCCTAAAACTGACCAGGCGCGTTCCGCCGTCGAGAGCGCGGTAAAAACTCTGGCGCAGCAGGCGCTGGAAA
ACACCGTTACCTTCTCCAACGACACCTATCGCACCATCCAGAACCTGATTGCGGGTATCGACGAACAGCTCTCTCAGCAG
GTGAATCAGATCATTCACCACGAAGAGTTTCAGAAGCTGGAGAGCGCCTGGCGCGGTCTGAGCTATCTTGTGAACAACAC
TGAAACCGACGAGATGCTGAAGATCCGCTTTATGAGCATCTCCAAGCAGGAGCTGGGCCGTACCCTGAAACGCTATAAGG
GTGTGGGCTGGGATCAGAGCCCGATCTTCAAGAAAATCTACGAGCAGGAGTACGGTCAGTTTGGTGGTGAGCCGTTTGGC
TGCATCGTCGGCGACTACTACTTTGACCACAGCCCGCAGGACGTTGAACTGCTGGGTGAAATGGCGCGCATCGGCTCTGC
GGCTCACTGTCCGTTCATCACCGGTACCGCACCGGGCGTGATGCAGATGGAGTCCTGGCAGGAGCTGGCTAACCCACGCG
ATCTGACCAAAATCTTCCAGAACACCGAATACGCCGCCTGGCGTTCACTGCGTGAATCGGAAGATGCCCGCTATCTGGGC
CTGGTGATGCCGCGCTTCCTGTCTCGCCTGCCTTACGGCATTCGTACTAACCCGGTCGACAGCTTTGACTTTGAAGAGCA
GACCGACGGCGCGAACCACAACAGCTACGCCTGGGCGAATGCTGCTTACGCGATGGCGGCCAACATCAACCGCTCTTTCA
AAGAGTACGGCTGGTGCACCTCCATTCGCGGCGTGGAGTCCGGCGGGGCGGTTGAAAACCTGCCGTGCCATACCTTCCCG
AGCGACGACGGCGGCGTGGACATGAAATGTCCGACCGAGATCGCCATCAGCGACCGTCGCGAAGCCGAGCTGGCGAAAAA
TGGCTTTATGCCGCTGGTTCACCGCAAAAACTCCGACTTTGCTGCCTTCATTGGCGCGCAGTCGCTGCAAAAACCGGCCG
AGTACCACGACCCGGATGCCACCGCCAACGCGCGTCTGGCCTCCCGTCTGCCGTACCTGTTCGCCTGCTGCCGCTTTGCG
CATTACCTGAAGTGCATCGTGCGTGACAAAATCGGCTCCTTCCGCGAGCGCGAAGAGATGGAACGCTGGCTGAACGACTG
GGTCATGAACTACGTGGACGGTGACCCGGCTAACTCCTCTCAGGAGACCAAGTCCCGCAAGCCACTGGCCGCTGCAGAAG
TCCAGGTGCAGGAGATTGAAGACAACCCGGGCTACTATGCCGCGAAGTTCTTCCTGCGTCCGCACTACCAGCTGGAAGGT
CTGACCGTTTCTCTGCGTCTGGTATCTAAACTGCCGTCGCTGAAGACGAAAGACGCGTAA
ATGAGCAACCAGACTCAACAACACGAGCAGCAGGCAGGTCAGGCGTTCAGTCAGGACGAGTTCAGCGCACTGCTGAACAA
AGAGTTCCGTCCTAAAACTGACCAGGCGCGTTCCGCCGTCGAGAGCGCGGTAAAAACTCTGGCGCAGCAGGCGCTGGAAA
ACACCGTTACCTTCTCCAACGACACCTATCGCACCATCCAGAACCTGATTGCGGGTATCGACGAACAGCTCTCTCAGCAG
GTGAATCAGATCATTCACCACGAAGAGTTTCAGAAGCTGGAGAGCGCCTGGCGCGGTCTGAGCTATCTTGTGAACAACAC
TGAAACCGACGAGATGCTGAAGATCCGCTTTATGAGCATCTCCAAGCAGGAGCTGGGCCGTACCCTGAAACGCTATAAGG
GTGTGGGCTGGGATCAGAGCCCGATCTTCAAGAAAATCTACGAGCAGGAGTACGGTCAGTTTGGTGGTGAGCCGTTTGGC
TGCATCGTCGGCGACTACTACTTTGACCACAGCCCGCAGGACGTTGAACTGCTGGGTGAAATGGCGCGCATCGGCTCTGC
GGCTCACTGTCCGTTCATCACCGGTACCGCACCGGGCGTGATGCAGATGGAGTCCTGGCAGGAGCTGGCTAACCCACGCG
ATCTGACCAAAATCTTCCAGAACACCGAATACGCCGCCTGGCGTTCACTGCGTGAATCGGAAGATGCCCGCTATCTGGGC
CTGGTGATGCCGCGCTTCCTGTCTCGCCTGCCTTACGGCATTCGTACTAACCCGGTCGACAGCTTTGACTTTGAAGAGCA
GACCGACGGCGCGAACCACAACAGCTACGCCTGGGCGAATGCTGCTTACGCGATGGCGGCCAACATCAACCGCTCTTTCA
AAGAGTACGGCTGGTGCACCTCCATTCGCGGCGTGGAGTCCGGCGGGGCGGTTGAAAACCTGCCGTGCCATACCTTCCCG
AGCGACGACGGCGGCGTGGACATGAAATGTCCGACCGAGATCGCCATCAGCGACCGTCGCGAAGCCGAGCTGGCGAAAAA
TGGCTTTATGCCGCTGGTTCACCGCAAAAACTCCGACTTTGCTGCCTTCATTGGCGCGCAGTCGCTGCAAAAACCGGCCG
AGTACCACGACCCGGATGCCACCGCCAACGCGCGTCTGGCCTCCCGTCTGCCGTACCTGTTCGCCTGCTGCCGCTTTGCG
CATTACCTGAAGTGCATCGTGCGTGACAAAATCGGCTCCTTCCGCGAGCGCGAAGAGATGGAACGCTGGCTGAACGACTG
GGTCATGAACTACGTGGACGGTGACCCGGCTAACTCCTCTCAGGAGACCAAGTCCCGCAAGCCACTGGCCGCTGCAGAAG
TCCAGGTGCAGGAGATTGAAGACAACCCGGGCTACTATGCCGCGAAGTTCTTCCTGCGTCCGCACTACCAGCTGGAAGGT
CTGACCGTTTCTCTGCGTCTGGTATCTAAACTGCCGTCGCTGAAGACGAAAGACGCGTAA