Detailed information of component protein


Summary

Component ID T6CP210272
Component protein type TssB
T6SS ID (Type) T6SS14097 experimental (Type i3)
Strain Enterobacter cloacae strain DSM 30054
Replicon chromosome
Sequence Protein sequence (175 a.a.); Nucleotide sequence (525 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) HWQ16_RS19730
Coordinate (Strand) 4046023..4046547 (+)
NCBI ID WP_008502644.1
RefSeq NZ_CP056776
Uniprot ID A0A5F0JRS5_9ENTR, V3PNX8_9ENTR, W7P3W4_9ENTR, A0A1H8NZN7_9ENTR, A0A3L9SRC9_9ENTR, A0A0J6MJR5_9ENTR, A0A1S2AHS5_9ENTR, A0A1M5IM24_9GAMM, A0A1Z3N2P7_9ENTR, A0A808IJN7_9ENTR, A0A4P6Y0H3_9ENTR, A0A2T9VCJ2_9ENTR, A0A5Q5DZ08_9ENTR, A0A0F1AZA2_9ENTR, A0A7U5VDI7_9ENTR, A0A2S4SQW0_9ENTR, A0A855MAN5_9ENTR, A0A2U3F0D1_9ENTR, A0A8B2SCN7_9ENTR, A0A5C1C199_9ENTR, A0A8B3JN31_9ENTR, A0A3A3ZSL7_9ENTR, A0A6C2DNW4_9ENTR, A0A7W2X6P2_9ENTR, W0BIH0_9ENTR, A0A7T0DSS0_9ENTR, A0A0M2GAK3_ENTCL, A0A8B2UNE1_9ENTR, A0A6L4XN24_ECOLX, A0A331GP45_KLEPN, A0A0M1G4X3_ENTAS, A0A1J5WPS8_9ENTR, A0A0H3CKM1_ENTCC, A0A2J7SYB3_9ENTR
KEGG ID ecls:LI67_012780, ehm:AB284_12570, eclg:EC036_26040, echg:FY206_14320, enc:ECL_01539, elg:BH714_09215
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 3.7e-58 12..161

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-174 MAMSNSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKPVENLPAVDERKFLEIDIDNFDERMKALKPRVAFQVDNTLTGEGKLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKILQDPTLLKSLSQLPKNDESAKGSEE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9959 - -



  Protein sequence: 175 a.a.    

>T6CP210272 NZ_CP056776:4046023-4046547 [Enterobacter cloacae] [TssB]
MAMSNSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKPVENLPAVDERKFLEIDIDNFDERMKALKPR
VAFQVDNTLTGEGKLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKILQDPTLLKSLS
QLPKNDESAKGSEE*

  Nucleotide sequence: 525 bp    

>T6CP210272 NZ_CP056776:4046023-4046547 [Enterobacter cloacae] [TssB]
ATGGCAATGAGTAACAGTGGGCAGAAATTTATCGCACGTAACCGTGCCCCCCGCGTGCAGATCGAGTACGACGTAGAGAT
CTACGGTGCAGAACGTAAAATTCAGCTGCCGTTCGTGATGGGCGTTATGGCCGATCTGGTCGGCAAACCGGTGGAAAATC
TGCCGGCCGTCGATGAGCGTAAATTCCTCGAAATCGACATTGATAACTTTGACGAACGCATGAAGGCGCTTAAGCCACGC
GTAGCGTTCCAGGTGGATAACACTCTCACCGGTGAAGGCAAGCTCAACGTCGACCTGACCTTCGACAGCATGGACGACTT
CCTGCCGGATGCGGTGGCACGCAAGGTTGAGCCGCTGAACAAGCTGCTGGAAGCGCGTACTCAGCTTTCCAATCTGCTGA
CCTACATGGACGGTAAAAACGGCGCGGAAGAGCTGATCGCTAAAATTCTGCAAGATCCGACGCTGCTCAAATCCCTGAGC
CAGTTGCCGAAAAATGACGAAAGTGCGAAAGGTAGCGAGGAGTAA