Detailed information of component protein
Summary
| Component ID | T6CP210272 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS14097  (Type i3) |
| Strain | Enterobacter cloacae strain DSM 30054 |
| Replicon | chromosome |
| Sequence | Protein sequence (175 a.a.); Nucleotide sequence (525 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | HWQ16_RS19730 |
| Coordinate (Strand) | 4046023..4046547 (+) |
| NCBI ID | WP_008502644.1 |
| RefSeq | NZ_CP056776 |
| Uniprot ID | A0A5F0JRS5_9ENTR, V3PNX8_9ENTR, W7P3W4_9ENTR, A0A4R8KRR1_9ENTR, A0A3L9SRC9_9ENTR, A0A0J6MJR5_9ENTR, A0A1S2AHS5_9ENTR, A0A1M5IM24_9GAMM, A0A1Z3N2P7_9ENTR, A0A4P6Y0H3_9ENTR, A0A2T9VCJ2_9ENTR, A0A5Q5DZ08_9ENTR, A0A0F1AZA2_9ENTR, A0A7U5VDI7_9ENTR, A0A2S4SQW0_9ENTR, A0A2U3F0D1_9ENTR, A0A5C1C199_9ENTR, A0A3A3ZSL7_9ENTR, A0A6C2DNW4_9ENTR, A0A7W2X6P2_9ENTR, W0BIH0_9ENTR, A0A0M2GAK3_ENTCL, A0A6L4XN24_ECOLX, A0A331GP45_KLEPN, A0A0M1G4X3_ENTAS, A0A1J5WPS8_9ENTR, A0A0H3CKM1_ENTCC, A0A2J7SYB3_9ENTR |
| KEGG ID | ecls:LI67_012780, ehm:AB284_12570, eclg:EC036_26040, echg:FY206_14320, enc:ECL_01539, elg:BH714_09215 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 3.7e-58 | 12..161 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-174 | MAMSNSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKPVENLPAVDERKFLEIDIDNFDERMKALKPRVAFQVDNTLTGEGKLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKILQDPTLLKSLSQLPKNDESAKGSEE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9959 | - | - |
Protein sequence: 175 a.a.
>T6CP210272 NZ_CP056776:4046023-4046547 [Enterobacter cloacae] [TssB]
MAMSNSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKPVENLPAVDERKFLEIDIDNFDERMKALKPR
VAFQVDNTLTGEGKLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKILQDPTLLKSLS
QLPKNDESAKGSEE*
MAMSNSGQKFIARNRAPRVQIEYDVEIYGAERKIQLPFVMGVMADLVGKPVENLPAVDERKFLEIDIDNFDERMKALKPR
VAFQVDNTLTGEGKLNVDLTFDSMDDFLPDAVARKVEPLNKLLEARTQLSNLLTYMDGKNGAEELIAKILQDPTLLKSLS
QLPKNDESAKGSEE*
Nucleotide sequence: 525 bp
>T6CP210272 NZ_CP056776:4046023-4046547 [Enterobacter cloacae] [TssB]
ATGGCAATGAGTAACAGTGGGCAGAAATTTATCGCACGTAACCGTGCCCCCCGCGTGCAGATCGAGTACGACGTAGAGAT
CTACGGTGCAGAACGTAAAATTCAGCTGCCGTTCGTGATGGGCGTTATGGCCGATCTGGTCGGCAAACCGGTGGAAAATC
TGCCGGCCGTCGATGAGCGTAAATTCCTCGAAATCGACATTGATAACTTTGACGAACGCATGAAGGCGCTTAAGCCACGC
GTAGCGTTCCAGGTGGATAACACTCTCACCGGTGAAGGCAAGCTCAACGTCGACCTGACCTTCGACAGCATGGACGACTT
CCTGCCGGATGCGGTGGCACGCAAGGTTGAGCCGCTGAACAAGCTGCTGGAAGCGCGTACTCAGCTTTCCAATCTGCTGA
CCTACATGGACGGTAAAAACGGCGCGGAAGAGCTGATCGCTAAAATTCTGCAAGATCCGACGCTGCTCAAATCCCTGAGC
CAGTTGCCGAAAAATGACGAAAGTGCGAAAGGTAGCGAGGAGTAA
ATGGCAATGAGTAACAGTGGGCAGAAATTTATCGCACGTAACCGTGCCCCCCGCGTGCAGATCGAGTACGACGTAGAGAT
CTACGGTGCAGAACGTAAAATTCAGCTGCCGTTCGTGATGGGCGTTATGGCCGATCTGGTCGGCAAACCGGTGGAAAATC
TGCCGGCCGTCGATGAGCGTAAATTCCTCGAAATCGACATTGATAACTTTGACGAACGCATGAAGGCGCTTAAGCCACGC
GTAGCGTTCCAGGTGGATAACACTCTCACCGGTGAAGGCAAGCTCAACGTCGACCTGACCTTCGACAGCATGGACGACTT
CCTGCCGGATGCGGTGGCACGCAAGGTTGAGCCGCTGAACAAGCTGCTGGAAGCGCGTACTCAGCTTTCCAATCTGCTGA
CCTACATGGACGGTAAAAACGGCGCGGAAGAGCTGATCGCTAAAATTCTGCAAGATCCGACGCTGCTCAAATCCCTGAGC
CAGTTGCCGAAAAATGACGAAAGTGCGAAAGGTAGCGAGGAGTAA