Detailed information of component protein


Summary

Component ID T6CP207895
Component protein type TssK
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (448 a.a.); Nucleotide sequence (1344 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS21425
Coordinate (Strand) 4494921..4496264 (-)
NCBI ID WP_022648417.1
RefSeq NZ_CP056118
Uniprot ID A0A431SCE5_9ENTR, A0A7H9JU53_ENTCL
KEGG ID ecli:ECNIH5_12540
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.4e-138 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-447 MTKAEKVVWTEGMFLRPHHFQRTESYLLNHVREWGALQRSYLWGFLDLELDEAMLRQGCIALSYCSGLLPDGTFFQVRSDRNGPAPLKIPDNLTNEKVVLALPVRRGGREEVIFSEEHSSLARFITFEQEVEDDNAMSVGEATVQFGRLRLTLMLEKDLTAEWTAIGVACVAEKRNDNHVRLDNSYIPPMLNANNSPQLYGMINDLHGLLVQRSQQIGGRLRQPGRFNTSEMVEFTLLSLINRHLGDISHLKTLPLLHPEALWRSWLPFATELATWTPQRTAESVLPVYDHDDLALCFGKLMLMLRQGLSLVMEDHAIQLPLHERSHGLNIATVPETSMVREFGFVLAVKANVPGEHLQTHFPAQMKVAPVSKIRDLVQLQLPGIMLRAMPVAPPQIPWHAGYSYFELERGSELWHEMDKSGAFALHLAGEFPGLDMEFWAIRSPTE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9978 - -


  Protein sequence: 448 a.a.    

>T6CP207895 NZ_CP056118:c4496264-4494921 [Enterobacter sp. DSM 30060] [TssK]
MTKAEKVVWTEGMFLRPHHFQRTESYLLNHVREWGALQRSYLWGFLDLELDEAMLRQGCIALSYCSGLLPDGTFFQVRSD
RNGPAPLKIPDNLTNEKVVLALPVRRGGREEVIFSEEHSSLARFITFEQEVEDDNAMSVGEATVQFGRLRLTLMLEKDLT
AEWTAIGVACVAEKRNDNHVRLDNSYIPPMLNANNSPQLYGMINDLHGLLVQRSQQIGGRLRQPGRFNTSEMVEFTLLSL
INRHLGDISHLKTLPLLHPEALWRSWLPFATELATWTPQRTAESVLPVYDHDDLALCFGKLMLMLRQGLSLVMEDHAIQL
PLHERSHGLNIATVPETSMVREFGFVLAVKANVPGEHLQTHFPAQMKVAPVSKIRDLVQLQLPGIMLRAMPVAPPQIPWH
AGYSYFELERGSELWHEMDKSGAFALHLAGEFPGLDMEFWAIRSPTE*

  Nucleotide sequence: 1344 bp    

>T6CP207895 NZ_CP056118:c4496264-4494921 [Enterobacter sp. DSM 30060] [TssK]
ATGACGAAAGCAGAAAAGGTCGTCTGGACCGAGGGCATGTTCCTGCGTCCCCACCATTTTCAGCGGACAGAAAGTTACCT
CCTCAACCACGTTCGTGAGTGGGGGGCCTTGCAGCGTTCGTATCTCTGGGGCTTTCTCGACCTTGAGCTGGATGAAGCGA
TGCTTCGCCAGGGCTGTATTGCCCTGAGCTACTGTAGCGGTTTGCTCCCTGACGGCACCTTTTTCCAGGTGCGCAGCGAC
CGCAACGGTCCGGCCCCGCTAAAAATCCCCGATAATCTTACCAATGAAAAGGTGGTGCTTGCGCTGCCGGTTCGTCGCGG
TGGACGTGAAGAGGTGATTTTCAGCGAGGAGCACTCTTCTCTGGCGCGTTTTATTACGTTTGAACAAGAGGTAGAAGACG
ACAACGCCATGTCGGTCGGGGAAGCGACGGTTCAGTTTGGCCGCCTGCGTCTGACCCTGATGCTGGAGAAAGATCTGACG
GCAGAATGGACCGCCATCGGCGTGGCGTGCGTCGCTGAAAAGCGCAACGACAACCACGTGCGGCTGGATAACAGCTACAT
CCCACCAATGCTGAACGCCAATAACAGCCCGCAGCTGTACGGCATGATCAATGACCTGCACGGCCTGCTGGTGCAGCGTA
GCCAGCAGATCGGCGGCCGTCTGCGCCAGCCGGGGCGTTTCAATACGTCCGAGATGGTTGAGTTCACGCTTCTTTCGCTG
ATCAACCGCCACCTTGGCGACATCTCACATTTAAAAACGCTGCCGCTGCTTCACCCTGAAGCGCTCTGGCGAAGCTGGCT
GCCGTTTGCCACGGAACTCGCTACCTGGACGCCGCAGCGTACCGCAGAGAGCGTACTGCCGGTATACGACCATGACGATC
TCGCCCTTTGCTTCGGCAAACTGATGCTAATGCTGCGTCAGGGGCTGTCGCTGGTCATGGAAGATCATGCCATCCAGCTG
CCGCTGCACGAACGCTCTCACGGACTGAACATCGCCACCGTACCGGAGACCAGCATGGTCCGCGAATTTGGCTTCGTGCT
GGCGGTAAAAGCCAATGTCCCCGGCGAACACCTGCAAACCCATTTCCCTGCCCAGATGAAGGTTGCGCCAGTCTCGAAAA
TTCGCGATCTGGTTCAGCTCCAACTGCCGGGCATCATGCTTCGGGCAATGCCCGTCGCGCCGCCGCAGATCCCGTGGCAT
GCAGGCTACAGCTATTTCGAGCTCGAGAGGGGCAGCGAACTGTGGCACGAGATGGACAAGTCTGGGGCATTCGCGCTGCA
TCTCGCAGGGGAATTCCCGGGTCTCGATATGGAGTTCTGGGCCATCCGTAGCCCGACAGAATAA