Detailed information of component protein


Summary

Component ID T6CP207894
Component protein type TssL
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (413 a.a.); Nucleotide sequence (1239 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS21420
Coordinate (Strand) 4493665..4494903 (-)
NCBI ID WP_003859963.1
RefSeq NZ_CP056118
Uniprot ID A0A0F1PZV3_9ENTR, A0A5Q5E6R8_9ENTR, A0A4Q2QYV8_9ENTR, A0A157E5Y1_ENTCL
KEGG ID ehm:AB284_12550, ecli:ECNIH5_12535
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 1.7e-67 22..223
OmpA PF00691.22 5e-14 290..388
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-199 MQERQDTGSDAVFTGASGNNQLVAAANPLLNAIPQIRHSVSHDDQVGLRQRLIDEIRRFEVRCQQAGLPYEVIVGARYCLCTALDEAAALTPWGSSGVWSSNGLLVTFHNETWGGEKFFQLLARLSQNPREHILLLEMINYCLLLGFEGRYRVLDNGRTQLETIKQRLWQMIRGVRGSYPPPLSPHPEDRPVLRKLWRP
Transmembrane helix 200-222 MIPLWACVALVGFIACLFYIVLN
Inside 223-412 WRLGDNTSPVLAKIYQSQLPETTIQQPARQLPAVLNLRGFLKPEIDAGLVAVKDEADRSVVILKGDGLFASASTVVRDRYEPVIDRIAQAMNNVSGKILVVGYSDNVPIRSARFASNYELSLERARSVQKQLQGSLSQPERVKAEGRGEINPVAPNTTPENRARNRRVEITLLVSPDNTQAELNGLPQGN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9332 - -


  Protein sequence: 413 a.a.    

>T6CP207894 NZ_CP056118:c4494903-4493665 [Enterobacter sp. DSM 30060] [TssL]
MQERQDTGSDAVFTGASGNNQLVAAANPLLNAIPQIRHSVSHDDQVGLRQRLIDEIRRFEVRCQQAGLPYEVIVGARYCL
CTALDEAAALTPWGSSGVWSSNGLLVTFHNETWGGEKFFQLLARLSQNPREHILLLEMINYCLLLGFEGRYRVLDNGRTQ
LETIKQRLWQMIRGVRGSYPPPLSPHPEDRPVLRKLWRPMIPLWACVALVGFIACLFYIVLNWRLGDNTSPVLAKIYQSQ
LPETTIQQPARQLPAVLNLRGFLKPEIDAGLVAVKDEADRSVVILKGDGLFASASTVVRDRYEPVIDRIAQAMNNVSGKI
LVVGYSDNVPIRSARFASNYELSLERARSVQKQLQGSLSQPERVKAEGRGEINPVAPNTTPENRARNRRVEITLLVSPDN
TQAELNGLPQGN*

  Nucleotide sequence: 1239 bp    

>T6CP207894 NZ_CP056118:c4494903-4493665 [Enterobacter sp. DSM 30060] [TssL]
ATGCAGGAACGACAGGATACCGGCAGTGATGCCGTGTTTACCGGAGCCAGTGGGAACAATCAGCTGGTGGCGGCCGCCAA
TCCGCTGCTCAATGCGATTCCGCAAATCCGTCATTCGGTTTCCCACGACGATCAGGTCGGGCTGCGCCAGCGCCTGATTG
ACGAAATTCGCCGTTTCGAGGTGCGATGCCAGCAGGCGGGCTTACCATATGAAGTGATTGTCGGCGCGCGCTACTGCCTC
TGCACGGCGCTGGACGAAGCCGCCGCTCTGACCCCCTGGGGAAGCAGCGGCGTCTGGTCAAGCAATGGTCTGCTGGTGAC
GTTTCATAACGAAACCTGGGGCGGCGAGAAGTTTTTCCAGCTGCTGGCACGTCTGTCTCAGAATCCGCGCGAACACATTC
TGCTGCTGGAGATGATCAACTACTGTTTGCTGCTCGGCTTTGAAGGCCGCTACCGCGTGCTGGACAATGGCCGGACCCAG
CTTGAAACCATCAAACAGCGCCTGTGGCAGATGATCCGTGGCGTTCGCGGCAGCTACCCGCCGCCGCTCTCGCCGCACCC
GGAAGATCGCCCCGTTCTGCGCAAGCTCTGGCGGCCGATGATTCCACTCTGGGCGTGCGTGGCGCTGGTCGGCTTTATCG
CCTGCCTGTTCTATATCGTGCTGAACTGGCGTCTCGGTGATAACACCAGCCCGGTGCTGGCGAAAATTTACCAGTCCCAA
CTGCCGGAAACCACGATCCAGCAACCTGCGCGCCAGCTGCCGGCGGTACTGAACCTGCGCGGCTTCCTGAAACCGGAAAT
TGATGCCGGTCTGGTGGCCGTTAAGGATGAGGCGGATCGCAGCGTGGTGATCCTGAAAGGGGACGGACTCTTTGCCTCGG
CCTCAACGGTGGTGCGCGATCGCTATGAGCCGGTCATCGACCGCATCGCCCAGGCGATGAATAACGTCAGCGGCAAAATT
CTGGTGGTGGGGTACAGCGACAACGTGCCGATCCGCAGCGCACGCTTCGCCTCTAACTATGAACTCTCGCTTGAGCGCGC
CCGTTCGGTGCAAAAACAGCTCCAGGGTAGCCTCTCGCAGCCTGAGCGCGTCAAAGCCGAAGGGCGGGGCGAGATCAACC
CGGTAGCGCCTAACACGACGCCTGAAAATCGCGCCCGTAACCGCCGCGTGGAGATTACGCTGCTGGTATCGCCTGACAAT
ACCCAGGCCGAGCTGAACGGATTGCCGCAAGGAAACTAA