Detailed information of component protein


Summary

Component ID T6CP207893
Component protein type TssM
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (1207 a.a.); Nucleotide sequence (3621 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS21415
Coordinate (Strand) 4490042..4493662 (-)
NCBI ID WP_063148588.1
RefSeq NZ_CP056118
Uniprot ID UPI00079C682D
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 2.7e-93 211..480
IcmF-related PF06761.14 2.7e-83 532..833
IcmF_C PF06744.14 3.4e-21 1089..1192
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MLTTLLSILTNR
Transmembrane helix 13-34 ILWSFLGVTALAAVIWMIGPLL
Outside 35-48 SIVDTRPLESEQNR
Transmembrane helix 49-71 VISIAVVYLIWAQSHILPRLYNA
Inside 72-471 WLNRKLMDKLNENTTSPEAADPQKRLNSEEQILAGRFDEAAQMLKKAHFSKAGHGAQWTQRFSTQYLYQLPWYVIIGAPGSGKTTALANSGLQFPLADRFGKTALRGIGGTRNCDWWFTNEAVLLDTAGRYTTQESEQVQDAGEWLEFINLLRKYRRRQPINGVIITISISDLLSQSAEASRQQAVNLRQRLSELHEQLGIRFPVYVMVTKADLLKGFRAWFADYDKAQRDQIWGFTLPWEQTKHADYDLMGNFQQEFSLLQQRLDAGLPETMLKEHDAKTRAEAYLFPQEFAALRPLLADYLSTVFARSNFETEFSPRGIYFASGTQEGMPFDRVMGELNRALSLPEGEESTRWDSVSKEAPIPGAKGQSFFIKNLLQNVIFQEAGIAGENRWWELRNR
Transmembrane helix 472-494 AVMWSGYAALLALLVILGGLWLT
Outside 495-1206 SYAKNKAYLEEVDAKVPMLEQQSKALQNQPQRDLFALLPLLNSLVDLPKSDAFDVNNPPVSRRMGLYRGDDVSDASQSLYQKALDQMLLPAVAMHITTWLRNDNGSDVEYSYEALKAYQMLYQPKHYDGKFLHSWVMLNLQRNLPQNVTQAQLQELEWHLKLLLEPKIQASPYAQDEDLVARERALINQQPLSTRVYGRLKRLLEHDENLKPVSLSDLGGPQSELVFSRKSGKPVSEGVPGLYTPDGYWKSFNDQIDSVTTALHEDDAWVLGATTAQEDKQQIDNAVRQLYMRDFIVNWDRFLADIQLNNSADLSQRINTARLLSGTNSPLRRLVLNLSKVLTLSRTAPAPEDAQKAEDQSNRATRTLEALFSNGDNAPTQGAVVTQAPEQLVTDHYAPMIELAQPLEKGGKTIVFDDFLKQVDELYRYLTAVQDAANSGMPAPGGDAISRLQASAGRLPGGLQTMFSNMAVGASSDTQRRDLENVRKRINVEVGGFCRQAIAGRYPLVRSASTEVTPDDLARMFAPGTGLMDTFFRDNLTNKVDTTQANWRFMPGIDGKTLPGSEGLLRPFQQAQSVRDAFFANGATTPSFKVTVRTVRMDNTILNLTLDVDGQLLRYSHGPQAVQIMTWPGPGGTNQVRMQLGLANGSTATLVTNGSWALNRFFDKARTSPGAGSLSRQATFNVDGHQVTLEFAPNSIRNPFQLPRFSCP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9900 - -


  Protein sequence: 1207 a.a.    

>T6CP207893 NZ_CP056118:c4493662-4490042 [Enterobacter sp. DSM 30060] [TssM]
MLTTLLSILTNRILWSFLGVTALAAVIWMIGPLLSIVDTRPLESEQNRVISIAVVYLIWAQSHILPRLYNAWLNRKLMDK
LNENTTSPEAADPQKRLNSEEQILAGRFDEAAQMLKKAHFSKAGHGAQWTQRFSTQYLYQLPWYVIIGAPGSGKTTALAN
SGLQFPLADRFGKTALRGIGGTRNCDWWFTNEAVLLDTAGRYTTQESEQVQDAGEWLEFINLLRKYRRRQPINGVIITIS
ISDLLSQSAEASRQQAVNLRQRLSELHEQLGIRFPVYVMVTKADLLKGFRAWFADYDKAQRDQIWGFTLPWEQTKHADYD
LMGNFQQEFSLLQQRLDAGLPETMLKEHDAKTRAEAYLFPQEFAALRPLLADYLSTVFARSNFETEFSPRGIYFASGTQE
GMPFDRVMGELNRALSLPEGEESTRWDSVSKEAPIPGAKGQSFFIKNLLQNVIFQEAGIAGENRWWELRNRAVMWSGYAA
LLALLVILGGLWLTSYAKNKAYLEEVDAKVPMLEQQSKALQNQPQRDLFALLPLLNSLVDLPKSDAFDVNNPPVSRRMGL
YRGDDVSDASQSLYQKALDQMLLPAVAMHITTWLRNDNGSDVEYSYEALKAYQMLYQPKHYDGKFLHSWVMLNLQRNLPQ
NVTQAQLQELEWHLKLLLEPKIQASPYAQDEDLVARERALINQQPLSTRVYGRLKRLLEHDENLKPVSLSDLGGPQSELV
FSRKSGKPVSEGVPGLYTPDGYWKSFNDQIDSVTTALHEDDAWVLGATTAQEDKQQIDNAVRQLYMRDFIVNWDRFLADI
QLNNSADLSQRINTARLLSGTNSPLRRLVLNLSKVLTLSRTAPAPEDAQKAEDQSNRATRTLEALFSNGDNAPTQGAVVT
QAPEQLVTDHYAPMIELAQPLEKGGKTIVFDDFLKQVDELYRYLTAVQDAANSGMPAPGGDAISRLQASAGRLPGGLQTM
FSNMAVGASSDTQRRDLENVRKRINVEVGGFCRQAIAGRYPLVRSASTEVTPDDLARMFAPGTGLMDTFFRDNLTNKVDT
TQANWRFMPGIDGKTLPGSEGLLRPFQQAQSVRDAFFANGATTPSFKVTVRTVRMDNTILNLTLDVDGQLLRYSHGPQAV
QIMTWPGPGGTNQVRMQLGLANGSTATLVTNGSWALNRFFDKARTSPGAGSLSRQATFNVDGHQVTLEFAPNSIRNPFQL
PRFSCP*

  Nucleotide sequence: 3621 bp    

>T6CP207893 NZ_CP056118:c4493662-4490042 [Enterobacter sp. DSM 30060] [TssM]
ATGCTGACTACTCTACTTTCTATACTGACCAATCGCATTCTGTGGAGCTTCCTGGGCGTAACGGCACTCGCGGCGGTCAT
CTGGATGATTGGCCCGCTGTTGTCCATCGTGGACACCCGGCCCCTTGAATCAGAGCAGAACCGCGTCATCAGCATTGCGG
TGGTCTACCTGATTTGGGCTCAGAGCCACATTCTGCCGCGGCTGTATAACGCCTGGCTGAACCGTAAGCTGATGGACAAG
CTTAACGAAAATACCACCAGCCCGGAGGCGGCCGATCCGCAGAAACGTCTGAACAGCGAGGAGCAGATCCTTGCCGGGCG
TTTCGATGAAGCCGCCCAGATGCTGAAAAAAGCCCACTTCAGCAAAGCGGGACATGGCGCGCAGTGGACGCAGCGCTTCA
GTACGCAGTACCTCTATCAGCTGCCGTGGTACGTCATTATTGGCGCGCCGGGTTCAGGTAAAACCACCGCGCTGGCCAAC
TCCGGGCTGCAATTCCCGCTGGCGGACCGCTTCGGTAAAACCGCGCTGCGCGGCATTGGCGGCACGCGCAACTGTGACTG
GTGGTTTACCAACGAGGCGGTTCTGCTGGATACCGCGGGGCGCTACACCACTCAGGAGAGCGAGCAGGTTCAGGACGCCG
GGGAGTGGCTGGAATTTATCAACCTGCTGCGTAAATACCGCCGTCGCCAGCCCATCAACGGCGTGATTATCACCATCAGC
ATTTCCGACCTGCTTTCGCAGTCCGCTGAGGCCTCCCGCCAGCAGGCGGTCAACCTGCGCCAGCGTCTCTCCGAGCTGCA
TGAACAGCTGGGGATTCGCTTCCCGGTGTATGTGATGGTGACCAAAGCGGATCTGCTTAAAGGCTTCCGCGCCTGGTTTG
CGGATTACGACAAAGCCCAGCGCGATCAGATCTGGGGCTTTACGCTGCCGTGGGAGCAGACCAAACACGCCGATTACGAC
CTGATGGGCAACTTCCAGCAGGAATTTTCCCTGCTGCAACAGCGTCTGGATGCTGGCCTGCCGGAAACCATGCTTAAAGA
GCATGACGCCAAAACCCGTGCGGAAGCCTATCTCTTCCCGCAGGAGTTCGCCGCGCTGCGTCCGCTGCTGGCAGACTACC
TGAGCACGGTCTTTGCCCGCTCAAACTTCGAAACCGAATTTTCGCCGCGCGGCATCTACTTTGCCAGCGGCACCCAGGAA
GGGATGCCGTTTGACCGCGTGATGGGCGAGCTGAACCGCGCGCTCTCCTTACCTGAAGGGGAGGAAAGCACGCGCTGGGA
TTCGGTAAGCAAAGAGGCGCCGATCCCGGGCGCGAAGGGCCAAAGCTTCTTCATTAAAAATCTGCTGCAAAACGTGATTT
TCCAGGAAGCGGGCATCGCCGGGGAAAACCGCTGGTGGGAGCTGCGCAACCGCGCCGTGATGTGGTCCGGCTACGCGGCG
CTGCTGGCCCTGCTGGTGATCCTGGGTGGTCTGTGGCTGACCAGCTACGCCAAAAATAAAGCTTATCTGGAAGAGGTAGA
TGCAAAAGTGCCGATGCTGGAGCAGCAGAGCAAGGCGCTGCAAAACCAGCCCCAGCGAGATCTGTTTGCGCTTCTGCCGC
TGCTTAACAGCCTGGTGGATCTGCCGAAAAGCGATGCCTTCGACGTTAACAACCCGCCGGTTTCCCGCCGCATGGGGCTT
TATCGCGGGGATGACGTCAGCGATGCCTCGCAGTCTCTGTATCAGAAGGCGCTGGATCAGATGCTGCTGCCTGCCGTGGC
GATGCACATTACCACCTGGCTGCGCAACGACAACGGCAGCGACGTGGAGTACAGCTATGAGGCGCTGAAAGCCTATCAGA
TGCTCTACCAGCCTAAGCATTATGACGGTAAATTCCTGCACTCGTGGGTTATGCTCAACCTGCAACGCAACCTGCCGCAG
AACGTGACGCAGGCGCAGCTTCAGGAGCTGGAATGGCACCTGAAGCTGCTGCTGGAGCCAAAAATTCAGGCTTCACCGTA
TGCGCAGGATGAGGATCTGGTGGCCCGCGAGAGGGCGCTGATCAACCAGCAGCCGCTCTCAACACGCGTATATGGGCGCC
TGAAACGTCTGCTGGAGCATGATGAGAACCTGAAGCCGGTTTCGCTTTCTGATCTCGGCGGCCCGCAGAGCGAGCTGGTG
TTTTCGCGTAAAAGCGGCAAGCCGGTGAGTGAGGGCGTACCGGGCCTCTATACGCCGGACGGCTACTGGAAAAGCTTCAA
CGACCAGATCGACAGCGTGACCACCGCCCTGCACGAGGACGATGCCTGGGTACTGGGAGCGACCACTGCCCAGGAAGATA
AACAGCAGATCGACAACGCCGTGCGTCAGCTCTACATGCGCGACTTTATCGTTAACTGGGATCGCTTTCTCGCTGACATT
CAGCTCAACAACAGCGCCGATCTTTCCCAGCGTATCAACACCGCGCGCCTGCTTTCAGGCACCAATTCGCCGCTGCGCCG
TCTGGTACTTAACCTGAGCAAGGTGCTGACCCTGTCGCGCACTGCGCCTGCGCCGGAAGATGCGCAGAAAGCGGAAGACC
AAAGCAACCGCGCCACCCGCACGCTGGAAGCACTGTTCAGCAACGGTGACAATGCCCCGACGCAGGGCGCGGTTGTGACG
CAGGCGCCTGAGCAACTGGTGACCGACCACTATGCGCCGATGATTGAGCTGGCGCAGCCGCTGGAGAAGGGCGGCAAGAC
CATCGTCTTTGATGATTTTCTTAAGCAGGTTGACGAGCTTTATCGCTACCTGACCGCCGTTCAGGATGCAGCCAACAGCG
GTATGCCTGCGCCGGGCGGCGATGCAATCAGCCGCCTGCAAGCCAGCGCGGGACGTCTGCCGGGCGGGCTGCAAACCATG
TTCAGCAATATGGCCGTCGGCGCCAGCAGCGACACTCAGCGTCGCGATCTGGAGAACGTGCGTAAGCGCATTAACGTGGA
AGTGGGTGGGTTCTGCCGTCAGGCGATTGCCGGGCGTTATCCGCTGGTGCGCAGCGCCAGCACTGAGGTGACGCCGGACG
ATCTCGCCCGCATGTTCGCGCCGGGCACCGGACTGATGGACACCTTTTTCCGCGACAACCTGACCAACAAGGTGGACACC
ACCCAGGCGAACTGGCGCTTTATGCCGGGCATCGACGGTAAAACGCTGCCGGGCAGTGAAGGGCTGCTGCGTCCGTTCCA
GCAGGCGCAGTCTGTCCGCGATGCCTTCTTCGCAAACGGCGCGACCACGCCATCCTTCAAGGTGACGGTGCGCACCGTGC
GTATGGACAATACCATTCTGAACCTGACGCTGGACGTGGACGGCCAACTGCTGCGCTACAGCCACGGTCCGCAGGCGGTG
CAGATCATGACCTGGCCGGGGCCGGGCGGGACGAACCAGGTGCGTATGCAGCTCGGTCTTGCCAATGGCAGCACCGCAAC
GCTGGTGACCAACGGTTCCTGGGCGCTGAACCGCTTTTTCGACAAGGCGCGCACCAGTCCTGGCGCGGGTAGCCTGAGCC
GTCAGGCGACCTTCAACGTCGACGGACATCAGGTCACGCTGGAGTTTGCCCCGAACAGCATCCGTAACCCGTTCCAGCTT
CCCCGTTTCTCATGCCCATAA