Detailed information of component protein


Summary

Component ID T6CP207889
Component protein type TssC
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (500 a.a.); Nucleotide sequence (1500 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS21395
Coordinate (Strand) 4486178..4487677 (-)
NCBI ID WP_006810956.1
RefSeq NZ_CP056118
Uniprot ID A0A145NR70_9ENTR, A0A5Q5E925_9ENTR, A0A0A6G5W4_ENTCL, A0A6L4XNZ9_ECOLX, A0A2J7S2Q6_9ENTR, F5RYL2_9ENTR
KEGG ID ecli:ECNIH5_12510, ehm:AB284_12575
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1e-136 68..370
VipB_2 PF18945.2 2e-44 380..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-499 MSNQTQQHDQQAGQAFSQDEFSALLNKEFRPKTDQARSAVESAVKTLAQQALENTVTFSNDTYRTIQNLIAGIDEQLSQQVNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKIYEQEYGQFGGEPFGCIVGDYYFDHSPQDVELLGEMARIGSAAHCPFITGTAPGVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLGLVMPRFLSRLPYGIRTNPVDSFDFEEQTDGANHNSYSWANAAYAMAANINRSFKEYGWCTSIRGVESGGAVENLPCHTFPSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYHDPDATANARLASRLPYLFACCRFAHYLKCIVRDKIGSFREREEMERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLEGLTVSLRLVSKLPSLKTKDA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9721 - -


  Protein sequence: 500 a.a.    

>T6CP207889 NZ_CP056118:c4487677-4486178 [Enterobacter sp. DSM 30060] [TssC]
MSNQTQQHDQQAGQAFSQDEFSALLNKEFRPKTDQARSAVESAVKTLAQQALENTVTFSNDTYRTIQNLIAGIDEQLSQQ
VNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSISKQELGRTLKRYKGVGWDQSPIFKKIYEQEYGQFGGEPFG
CIVGDYYFDHSPQDVELLGEMARIGSAAHCPFITGTAPGVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLG
LVMPRFLSRLPYGIRTNPVDSFDFEEQTDGANHNSYSWANAAYAMAANINRSFKEYGWCTSIRGVESGGAVENLPCHTFP
SDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDFAAFIGAQSLQKPAEYHDPDATANARLASRLPYLFACCRFA
HYLKCIVRDKIGSFREREEMERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLEG
LTVSLRLVSKLPSLKTKDA*

  Nucleotide sequence: 1500 bp    

>T6CP207889 NZ_CP056118:c4487677-4486178 [Enterobacter sp. DSM 30060] [TssC]
ATGAGCAACCAGACTCAACAACACGATCAGCAGGCGGGCCAGGCCTTCAGCCAGGACGAGTTCAGCGCGCTGCTGAATAA
AGAGTTCCGCCCGAAAACCGATCAGGCGCGCTCTGCCGTAGAAAGCGCGGTAAAAACCCTGGCGCAGCAGGCGCTGGAAA
ACACCGTAACCTTCTCAAACGATACCTACCGCACCATTCAGAACCTGATTGCCGGTATTGACGAGCAGCTTTCACAGCAG
GTGAACCAGATCATTCACCACGAGGAGTTCCAGAAGCTGGAGAGCGCCTGGCGCGGGCTGAGCTATCTGGTGAACAACAC
CGAAACCGACGAGATGCTGAAGATCCGCTTTATGAGCATCTCCAAGCAGGAGCTGGGCCGCACCCTGAAGCGCTACAAGG
GCGTGGGCTGGGACCAGAGCCCGATCTTCAAAAAAATCTACGAGCAGGAGTACGGCCAGTTCGGTGGCGAGCCGTTTGGC
TGCATCGTAGGCGACTACTACTTCGACCACAGCCCGCAGGACGTTGAGCTGCTGGGCGAGATGGCGCGCATCGGCTCTGC
GGCCCACTGTCCGTTCATTACCGGCACCGCGCCGGGCGTGATGCAGATGGAGTCCTGGCAGGAGCTGGCTAACCCGCGCG
ACCTGACAAAAATCTTTCAGAACACCGAATACGCCGCCTGGCGTTCACTGCGTGAATCGGAAGATGCCCGTTATCTGGGC
CTGGTCATGCCGCGCTTCCTGTCGCGTCTGCCGTACGGCATTCGCACCAATCCGGTCGACAGCTTTGACTTTGAAGAGCA
GACCGACGGCGCGAACCACAACAGCTACTCCTGGGCGAACGCGGCTTACGCGATGGCCGCCAACATCAACCGTTCCTTCA
AAGAGTACGGCTGGTGCACCTCGATTCGCGGCGTGGAGTCCGGCGGGGCGGTGGAAAACCTGCCGTGCCACACCTTCCCG
AGCGATGACGGCGGCGTGGACATGAAATGCCCGACCGAGATCGCCATCAGCGATCGTCGTGAAGCCGAGCTGGCGAAAAA
CGGCTTTATGCCGCTGGTTCACCGCAAAAACTCCGACTTCGCCGCCTTCATCGGCGCGCAGTCCCTGCAAAAACCGGCCG
AGTATCACGACCCGGATGCCACCGCTAACGCGCGTCTGGCCTCCCGTCTGCCTTACCTGTTCGCCTGCTGTCGTTTTGCT
CACTACCTGAAGTGCATCGTGCGCGACAAAATCGGCTCCTTCCGCGAGCGAGAAGAGATGGAACGCTGGCTGAACGACTG
GGTGATGAACTACGTGGACGGCGACCCGGCTAACTCCTCCCAGGAAACCAAGTCCCGTAAACCGCTGGCGGCGGCGGAAG
TGCAGGTGCAGGAAATTGAAGACAACCCGGGCTACTACGCCGCGAAGTTCTTCCTGCGTCCACACTACCAGCTGGAAGGC
CTGACCGTTTCCCTGCGTCTGGTATCTAAACTGCCGTCGCTGAAGACGAAGGACGCGTAA