Detailed information of component protein


Summary

Component ID T6CP207887
Component protein type TssD
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (161 a.a.); Nucleotide sequence (483 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) HWQ15_RS21375
Coordinate (Strand) 4484078..4484560 (-)
NCBI ID WP_014884229.1
RefSeq NZ_CP056118
Uniprot ID V3P3Q8_9ENTR, A0A4V3HB51_9ENTR, A0A145NSW9_9ENTR, A0A2W0G8U0_9ENTR, A0A2T9VCC0_9ENTR, A0A5Q5EMU3_9ENTR, A0A7U5VD76_9ENTR, A0A0F0XPU6_9ENTR, A0A0X4ED58_9ENTR, A0A5C1C0T4_9ENTR, A0A4Q2QXJ3_9ENTR, A0A4R0FL95_9ENTR, A0A6C2DMN1_9ENTR, W0BVZ5_9ENTR, A0A6N3H5I2_ENTAG, A0A0A6JJI6_ENTCL, A0A6L4XN73_ECOLX, A0A4Y8IQZ8_9ENTR
KEGG ID elg:BH714_09190, eno:ECENHK_13195, ecli:ECNIH5_12490, ehm:AB284_12590, ecln:ECNIH4_09790, ekb:BFV64_13245, echg:FY206_14290
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 4.9e-37 6..131

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-160 MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLTKVELSVCKAGGQQVEYTRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTAGGKGAESSAGWNIKENKEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9458 - -



  Protein sequence: 161 a.a.    

>T6CP207887 NZ_CP056118:c4484560-4484078 [Enterobacter sp. DSM 30060] [TssD]
MAIDMFLKVEGVTGESKDSNHTGWTDITSFSWGASQPGNMSVGGGGGAGKVNFNDLHVNALIDKSTTAILKHCASGKHLT
KVELSVCKAGGQQVEYTRITLEDVLVTSVQYTGADNGDTVGVTYAFQAAKVKQQYWEQTTAGGKGAESSAGWNIKENKEA
*

  Nucleotide sequence: 483 bp    

>T6CP207887 NZ_CP056118:c4484560-4484078 [Enterobacter sp. DSM 30060] [TssD]
ATGGCTATTGATATGTTTCTGAAGGTCGAGGGTGTTACGGGCGAATCTAAAGATTCTAACCACACCGGCTGGACTGATAT
TACCTCCTTCTCCTGGGGCGCGTCCCAGCCGGGTAATATGAGCGTTGGTGGCGGCGGCGGTGCCGGTAAGGTTAACTTTA
ACGATCTGCACGTTAACGCTCTGATCGACAAATCCACTACAGCAATCCTGAAACACTGCGCAAGCGGTAAGCACCTGACC
AAAGTTGAACTGTCCGTCTGCAAAGCGGGTGGTCAGCAGGTTGAATATACCCGCATCACCCTGGAAGACGTTCTCGTGAC
TTCCGTTCAGTACACCGGTGCCGACAACGGCGATACCGTTGGCGTGACCTATGCATTCCAGGCTGCGAAAGTGAAACAGC
AGTACTGGGAGCAGACCACTGCCGGTGGTAAAGGTGCTGAAAGCAGCGCTGGCTGGAACATCAAAGAGAACAAAGAAGCG
TAA