Detailed information of component protein
Summary
Component ID | T6CP207883 |
Component protein type | TssE |
T6SS ID (Type) | T6SS13923 (Type i3) |
Strain | Enterobacter sp. DSM 30060 |
Replicon | chromosome |
Sequence | Protein sequence (188 a.a.); Nucleotide sequence (564 bp) |
Reference |
External database links
Locus tag (Gene) | HWQ15_RS21340 |
Coordinate (Strand) | 4477562..4478125 (-) |
NCBI ID | WP_015570336.1 |
RefSeq | NZ_CP056118 |
Uniprot ID | A0A0A5SRG7_9ENTR, A0A4R0FN73_9ENTR, A0A2J7LP68_ENTCL, A0A6D0K9E1_ECOLX |
KEGG ID | ecli:ECNIH5_12445, ehm:AB284_12625 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
GPW_gp25 | PF04965.16 | 2.7e-20 | 59..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-187 | MSNPAGEGDLLRSGWQARSRQEKVGARDKMQPSLLDRLTDNDPEKKRESANSNLITHAALRRNVLRDLQWLFNTINHDASSDLSGLTQVSRSVVNFGVAPLAGKRMSDIEWHDIQRKLTEAIINFEPRILPQGLQVRCVSDTSSLDLHNVLSIEIKGRLWCVPYPLEFLFRTDVDLENGHFELKDAG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9871 | - | - |
Protein sequence: 188 a.a.
>T6CP207883 NZ_CP056118:c4478125-4477562 [Enterobacter sp. DSM 30060] [TssE]
MSNPAGEGDLLRSGWQARSRQEKVGARDKMQPSLLDRLTDNDPEKKRESANSNLITHAALRRNVLRDLQWLFNTINHDAS
SDLSGLTQVSRSVVNFGVAPLAGKRMSDIEWHDIQRKLTEAIINFEPRILPQGLQVRCVSDTSSLDLHNVLSIEIKGRLW
CVPYPLEFLFRTDVDLENGHFELKDAG*
MSNPAGEGDLLRSGWQARSRQEKVGARDKMQPSLLDRLTDNDPEKKRESANSNLITHAALRRNVLRDLQWLFNTINHDAS
SDLSGLTQVSRSVVNFGVAPLAGKRMSDIEWHDIQRKLTEAIINFEPRILPQGLQVRCVSDTSSLDLHNVLSIEIKGRLW
CVPYPLEFLFRTDVDLENGHFELKDAG*
Nucleotide sequence: 564 bp
>T6CP207883 NZ_CP056118:c4478125-4477562 [Enterobacter sp. DSM 30060] [TssE]
ATGAGTAATCCCGCTGGCGAAGGCGATCTGCTGCGCAGCGGCTGGCAGGCCCGCAGCAGGCAGGAGAAAGTGGGGGCGCG
CGACAAAATGCAGCCGTCACTGCTGGATCGCCTGACGGATAACGATCCGGAAAAAAAACGCGAGTCCGCCAACAGTAATC
TGATTACCCACGCCGCGCTGCGTCGTAACGTCCTGCGGGATTTACAGTGGTTGTTTAACACCATTAACCACGATGCCTCC
AGCGATCTGAGTGGTCTGACGCAGGTGAGCCGTTCTGTCGTTAACTTTGGCGTCGCGCCGCTGGCGGGGAAAAGAATGTC
CGATATCGAATGGCACGACATTCAGCGCAAGCTCACCGAAGCGATTATTAACTTTGAACCGCGGATCCTGCCGCAGGGGC
TTCAGGTTCGCTGCGTGTCCGATACCTCCTCATTAGATCTGCACAACGTGCTGTCTATCGAAATCAAAGGCCGCCTGTGG
TGCGTACCGTATCCGCTGGAGTTTCTCTTTCGCACCGACGTCGATCTTGAGAACGGCCATTTTGAACTGAAGGATGCGGG
GTAA
ATGAGTAATCCCGCTGGCGAAGGCGATCTGCTGCGCAGCGGCTGGCAGGCCCGCAGCAGGCAGGAGAAAGTGGGGGCGCG
CGACAAAATGCAGCCGTCACTGCTGGATCGCCTGACGGATAACGATCCGGAAAAAAAACGCGAGTCCGCCAACAGTAATC
TGATTACCCACGCCGCGCTGCGTCGTAACGTCCTGCGGGATTTACAGTGGTTGTTTAACACCATTAACCACGATGCCTCC
AGCGATCTGAGTGGTCTGACGCAGGTGAGCCGTTCTGTCGTTAACTTTGGCGTCGCGCCGCTGGCGGGGAAAAGAATGTC
CGATATCGAATGGCACGACATTCAGCGCAAGCTCACCGAAGCGATTATTAACTTTGAACCGCGGATCCTGCCGCAGGGGC
TTCAGGTTCGCTGCGTGTCCGATACCTCCTCATTAGATCTGCACAACGTGCTGTCTATCGAAATCAAAGGCCGCCTGTGG
TGCGTACCGTATCCGCTGGAGTTTCTCTTTCGCACCGACGTCGATCTTGAGAACGGCCATTTTGAACTGAAGGATGCGGG
GTAA