Detailed information of component protein


Summary

Component ID T6CP207883
Component protein type TssE
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (188 a.a.); Nucleotide sequence (564 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) HWQ15_RS21340
Coordinate (Strand) 4477562..4478125 (-)
NCBI ID WP_015570336.1
RefSeq NZ_CP056118
Uniprot ID A0A0A5SRG7_9ENTR, A0A4R0FN73_9ENTR, A0A2J7LP68_ENTCL, A0A6D0K9E1_ECOLX
KEGG ID ecli:ECNIH5_12445, ehm:AB284_12625
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 2.7e-20 59..163

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-187 MSNPAGEGDLLRSGWQARSRQEKVGARDKMQPSLLDRLTDNDPEKKRESANSNLITHAALRRNVLRDLQWLFNTINHDASSDLSGLTQVSRSVVNFGVAPLAGKRMSDIEWHDIQRKLTEAIINFEPRILPQGLQVRCVSDTSSLDLHNVLSIEIKGRLWCVPYPLEFLFRTDVDLENGHFELKDAG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9871 - -



  Protein sequence: 188 a.a.    

>T6CP207883 NZ_CP056118:c4478125-4477562 [Enterobacter sp. DSM 30060] [TssE]
MSNPAGEGDLLRSGWQARSRQEKVGARDKMQPSLLDRLTDNDPEKKRESANSNLITHAALRRNVLRDLQWLFNTINHDAS
SDLSGLTQVSRSVVNFGVAPLAGKRMSDIEWHDIQRKLTEAIINFEPRILPQGLQVRCVSDTSSLDLHNVLSIEIKGRLW
CVPYPLEFLFRTDVDLENGHFELKDAG*

  Nucleotide sequence: 564 bp    

>T6CP207883 NZ_CP056118:c4478125-4477562 [Enterobacter sp. DSM 30060] [TssE]
ATGAGTAATCCCGCTGGCGAAGGCGATCTGCTGCGCAGCGGCTGGCAGGCCCGCAGCAGGCAGGAGAAAGTGGGGGCGCG
CGACAAAATGCAGCCGTCACTGCTGGATCGCCTGACGGATAACGATCCGGAAAAAAAACGCGAGTCCGCCAACAGTAATC
TGATTACCCACGCCGCGCTGCGTCGTAACGTCCTGCGGGATTTACAGTGGTTGTTTAACACCATTAACCACGATGCCTCC
AGCGATCTGAGTGGTCTGACGCAGGTGAGCCGTTCTGTCGTTAACTTTGGCGTCGCGCCGCTGGCGGGGAAAAGAATGTC
CGATATCGAATGGCACGACATTCAGCGCAAGCTCACCGAAGCGATTATTAACTTTGAACCGCGGATCCTGCCGCAGGGGC
TTCAGGTTCGCTGCGTGTCCGATACCTCCTCATTAGATCTGCACAACGTGCTGTCTATCGAAATCAAAGGCCGCCTGTGG
TGCGTACCGTATCCGCTGGAGTTTCTCTTTCGCACCGACGTCGATCTTGAGAACGGCCATTTTGAACTGAAGGATGCGGG
GTAA