Detailed information of component protein


Summary

Component ID T6CP207882
Component protein type TssF
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (624 a.a.); Nucleotide sequence (1872 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS21335
Coordinate (Strand) 4475688..4477559 (-)
NCBI ID WP_063148593.1
RefSeq NZ_CP056118
Uniprot ID UPI00079B5C05
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.6e-219 1..620
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-623 MESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYIERLMEGFAFLTSRVQMKMDAEFPRFSQRMLEMIAPNYLAPTPSMAIAEIQPDSSRGDLSKGFIVPRGTMMDSLALKKTGVTCSYTTAHEVNLLPLKIERIELGGVPADLPLAQLGLSQRGISSALRIRIACDGPQHLGHLDFDRLEFFLSGPDIEALKLLELVMEHHAGIVCQTVSKQPQRQLLSSDALRQEGFDADQALLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLGKLIQRCEDEKAFDIFVLLDKSDDQLERVVDASHMALHCTPVINLFPKVAARQKLSESQHEYHLVVDNIRPLDYEIYAVKKIYASADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVLSEHALRYGTRTGYIGSEVFVSLVDAQHAPWQENLRYISAEVLCTSRDLPLMLQQELGQFIMADSMPVKALTLRKGPTPPRPALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAETPVARQVDGVRHCVLEPVHRRVPEPGPVVFARGIGITLTVDERAFSGASPWLFGSVLERLFARLVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9957 - -


  Protein sequence: 624 a.a.    

>T6CP207882 NZ_CP056118:c4477559-4475688 [Enterobacter sp. DSM 30060] [TssF]
MESKLLEYYNRELAYLREMGAEFAERYPKVAGRLGMRGIEVADPYIERLMEGFAFLTSRVQMKMDAEFPRFSQRMLEMIA
PNYLAPTPSMAIAEIQPDSSRGDLSKGFIVPRGTMMDSLALKKTGVTCSYTTAHEVNLLPLKIERIELGGVPADLPLAQL
GLSQRGISSALRIRIACDGPQHLGHLDFDRLEFFLSGPDIEALKLLELVMEHHAGIVCQTVSKQPQRQLLSSDALRQEGF
DADQALLPDDLRNFDGYRLLQEYFAFPARFRFISLSGLGKLIQRCEDEKAFDIFVLLDKSDDQLERVVDASHMALHCTPV
INLFPKVAARQKLSESQHEYHLVVDNIRPLDYEIYAVKKIYASADGQRDDQTFRPFWSTWSGDAGNYGAYFSLRREQRVL
SEHALRYGTRTGYIGSEVFVSLVDAQHAPWQENLRYISAEVLCTSRDLPLMLQQELGQFIMADSMPVKALTLRKGPTPPR
PALAEGFSTWRLISQLQMNYLSLMDSENEEGAAALRQLLGLYANLAETPVARQVDGVRHCVLEPVHRRVPEPGPVVFARG
IGITLTVDERAFSGASPWLFGSVLERLFARLVSINSFTEFTLKSQQRGEIGYWAPRMGKRALV*

  Nucleotide sequence: 1872 bp    

>T6CP207882 NZ_CP056118:c4477559-4475688 [Enterobacter sp. DSM 30060] [TssF]
ATGGAAAGCAAACTGCTCGAATATTACAACCGTGAACTGGCCTATCTGCGCGAGATGGGCGCGGAGTTCGCCGAACGCTA
CCCAAAAGTGGCGGGGCGGCTCGGCATGCGCGGCATCGAAGTGGCGGATCCGTACATAGAGCGCCTGATGGAAGGTTTCG
CCTTCCTGACCTCCCGCGTGCAGATGAAAATGGACGCCGAATTTCCACGCTTTTCACAGCGTATGCTTGAGATGATTGCG
CCAAATTACCTGGCGCCTACGCCGTCGATGGCGATCGCTGAGATTCAGCCCGACAGCAGCCGCGGCGACCTGAGCAAAGG
CTTTATTGTGCCGCGCGGCACCATGATGGACAGCCTGGCGCTGAAAAAAACCGGCGTTACGTGCAGCTATACCACGGCGC
ACGAGGTCAACCTGCTGCCGTTAAAAATTGAGCGGATCGAGCTGGGCGGCGTTCCCGCCGATCTGCCGCTGGCCCAGCTC
GGCCTGAGTCAGCGGGGGATCAGCAGCGCCTTACGGATCCGCATTGCCTGCGATGGCCCGCAGCATCTTGGGCATCTGGA
TTTTGACCGCCTGGAGTTCTTCTTAAGCGGCCCGGACATCGAGGCGCTGAAGCTGCTGGAGCTGGTGATGGAGCACCACG
CGGGTATTGTCTGCCAGACGGTCAGCAAGCAGCCCCAGCGCCAGCTGCTGTCGTCTGACGCCCTGCGTCAGGAAGGCTTT
GATGCGGATCAGGCGCTGCTCCCGGACGATCTGCGTAACTTCGACGGCTATCGCCTGTTGCAGGAGTACTTTGCGTTCCC
GGCGCGTTTTCGCTTCATCAGCCTGAGCGGGCTGGGCAAGCTGATCCAGCGCTGCGAAGACGAAAAAGCGTTTGATATCT
TCGTTCTGCTCGACAAGAGCGACGATCAGCTGGAGCGCGTGGTGGATGCCAGCCACATGGCGCTGCACTGTACCCCGGTG
ATCAACCTGTTCCCGAAAGTGGCGGCCCGGCAGAAGCTGAGCGAAAGCCAGCATGAATACCATCTGGTGGTGGATAACAT
CCGCCCGCTGGATTATGAAATTTATGCTGTGAAAAAAATCTATGCCAGCGCGGATGGTCAGCGGGACGACCAGACGTTTC
GTCCGTTCTGGAGTACCTGGAGCGGAGACGCGGGCAACTACGGCGCCTATTTTTCCCTGCGCCGTGAACAGCGCGTCCTC
TCTGAACACGCGCTGCGCTACGGCACCCGCACGGGCTATATCGGCTCGGAGGTCTTCGTCTCGCTGGTGGATGCGCAGCA
CGCGCCGTGGCAGGAGAATTTGCGCTACATTTCCGCCGAGGTGCTGTGTACCAGCCGCGACCTGCCGCTGATGCTCCAGC
AGGAGCTTGGGCAGTTTATTATGGCCGACTCCATGCCGGTGAAGGCGTTAACCCTGCGTAAAGGCCCGACGCCGCCGCGT
CCGGCGCTGGCGGAAGGGTTCAGTACCTGGCGGCTCATCAGCCAGCTGCAAATGAACTACCTCAGCCTGATGGACAGCGA
AAACGAAGAGGGCGCTGCCGCGCTGCGTCAGCTGTTAGGGCTGTACGCTAACCTCGCCGAGACGCCGGTTGCCCGTCAGG
TGGATGGCGTTCGTCACTGCGTGCTGGAGCCGGTGCACCGCCGCGTGCCGGAACCCGGCCCGGTGGTGTTCGCCCGCGGG
ATCGGCATCACCCTGACGGTGGACGAACGCGCCTTTTCCGGTGCCAGCCCGTGGCTTTTCGGCAGCGTGCTGGAACGCCT
TTTTGCCCGCCTGGTCTCCATCAACAGCTTTACGGAGTTCACGCTCAAGAGCCAGCAGCGCGGCGAAATTGGCTACTGGG
CGCCGCGCATGGGTAAAAGGGCGCTGGTATGA