Detailed information of component protein


Summary

Component ID T6CP207880
Component protein type TssH
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (872 a.a.); Nucleotide sequence (2616 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) HWQ15_RS21325
Coordinate (Strand) 4471994..4474609 (-)
NCBI ID WP_063138102.1
RefSeq NZ_CP056118
Uniprot ID A0A145EHX2_9ENTR
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.2e-39 602..767
AAA_lid_9 PF17871.3 2e-25 363..454
ClpB_D2-small PF10431.11 5.9e-14 775..847
AAA PF00004.31 4.1e-10 223..355

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-871 MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQQDGDLQQVIRHFALDEQQLTRDIVAALDALPRGASSVSDLSEHIDSAVERAWVYGSLKFGVSRIRGGHLLIGILKTWNLANVLKSISAQFTRLNVEVLIEQFDAICASSKESQQAAAAADAAAGAVPAAQGTLAQYGQDLTARARDGKIDPVVGRDEEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGLALRIADGDVPEPLQNVQLWLLDIGMLQAGAGMKGEFEARLQALINEVQSSATPIILFIDEIHTLIGAGGQQGTGDAANLLKPALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVHEPDEAKAVLMLRSTVSPLETHHQVLLLDEAVSAAVKLSHRYIPARQLPDKAVALLDTACARVAVSQSAPPAQLEDCLRHLAALDVELEIAEREARVGAGDPARVATLSAERDAFETQREALARRWEEERTRVQEIIRLRAALFAASDEDTAELRGQLTEQQQALKTLQGDEPLLFAAVDENVVAAVVSDWTGIPLGRMVKNEIDAVLNLADTLNQRVIGQRHGLDLIARRVKTSRAKLDDPNKPVGVFMLCGPSGVGKTETALALAESLYGGEQNVITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTIIILTSNVGTELIAAMCADPELMPDPDALSGALRQPLLEVFPPALLGRLLVVPYYPLSDEMLGQIVRLQLRRIQRRLEENHNIISEFDDSVVEQIVQRCTEVESGGRMVDAILTNTLLPQMSQILLTASRSDEQYRRLHVTCEQGEFHCQFAA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9627 - -



  Protein sequence: 872 a.a.    

>T6CP207880 NZ_CP056118:c4474609-4471994 [Enterobacter sp. DSM 30060] [TssH]
MSEISRAVLFGKLDTLLFTSLESATAFCKLRGNPYVELVHWLHQLMQQQDGDLQQVIRHFALDEQQLTRDIVAALDALPR
GASSVSDLSEHIDSAVERAWVYGSLKFGVSRIRGGHLLIGILKTWNLANVLKSISAQFTRLNVEVLIEQFDAICASSKES
QQAAAAADAAAGAVPAAQGTLAQYGQDLTARARDGKIDPVVGRDEEIRQMVDILMRRRQNNPLLTGEAGVGKTAVVEGLA
LRIADGDVPEPLQNVQLWLLDIGMLQAGAGMKGEFEARLQALINEVQSSATPIILFIDEIHTLIGAGGQQGTGDAANLLK
PALARGQLRTIGATTWAEYKKYIEKDPALTRRFQTVQVHEPDEAKAVLMLRSTVSPLETHHQVLLLDEAVSAAVKLSHRY
IPARQLPDKAVALLDTACARVAVSQSAPPAQLEDCLRHLAALDVELEIAEREARVGAGDPARVATLSAERDAFETQREAL
ARRWEEERTRVQEIIRLRAALFAASDEDTAELRGQLTEQQQALKTLQGDEPLLFAAVDENVVAAVVSDWTGIPLGRMVKN
EIDAVLNLADTLNQRVIGQRHGLDLIARRVKTSRAKLDDPNKPVGVFMLCGPSGVGKTETALALAESLYGGEQNVITINM
SEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHPDVHEIFFQVFDKGWMEDGEGRHIDFRNTII
ILTSNVGTELIAAMCADPELMPDPDALSGALRQPLLEVFPPALLGRLLVVPYYPLSDEMLGQIVRLQLRRIQRRLEENHN
IISEFDDSVVEQIVQRCTEVESGGRMVDAILTNTLLPQMSQILLTASRSDEQYRRLHVTCEQGEFHCQFAA*

  Nucleotide sequence: 2616 bp    

>T6CP207880 NZ_CP056118:c4474609-4471994 [Enterobacter sp. DSM 30060] [TssH]
ATGTCAGAAATTAGCCGTGCCGTGCTTTTCGGCAAACTGGATACGCTGTTATTTACCTCTCTGGAAAGCGCGACTGCCTT
CTGTAAGCTGCGCGGCAACCCGTACGTTGAGCTGGTGCACTGGCTGCATCAGCTGATGCAGCAGCAGGATGGCGATCTGC
AACAGGTCATCCGTCACTTCGCCCTTGATGAACAGCAGCTGACGCGCGATATCGTGGCGGCGCTGGATGCCCTGCCGCGT
GGCGCGAGTTCCGTCTCTGACCTTTCCGAGCATATCGACAGCGCCGTCGAGCGCGCCTGGGTCTACGGCTCGCTGAAGTT
TGGCGTCAGCCGCATCCGCGGCGGCCATTTGTTGATCGGCATACTGAAAACGTGGAATCTGGCTAACGTGCTGAAAAGTA
TTTCGGCGCAGTTCACCCGTCTTAACGTCGAGGTGCTGATCGAACAGTTCGACGCTATTTGCGCCAGCAGCAAAGAGAGC
CAGCAGGCCGCCGCCGCTGCGGACGCAGCTGCCGGGGCAGTACCGGCTGCGCAGGGCACGCTGGCGCAGTATGGTCAGGA
TCTGACGGCGCGCGCCCGGGATGGGAAAATTGACCCGGTGGTGGGGCGCGATGAAGAGATCCGCCAGATGGTCGATATTC
TGATGCGTCGTCGCCAGAACAACCCCCTGCTGACCGGGGAAGCTGGCGTCGGGAAAACGGCAGTGGTGGAAGGGCTGGCG
CTGCGTATCGCTGACGGCGACGTGCCTGAGCCGCTGCAAAACGTTCAGCTGTGGCTGCTGGATATCGGCATGCTTCAGGC
CGGAGCGGGCATGAAAGGGGAATTTGAGGCGCGCCTCCAGGCGCTGATTAACGAGGTGCAGTCCAGCGCCACGCCGATTA
TTCTGTTTATCGATGAGATCCACACCCTGATTGGCGCTGGCGGCCAGCAGGGTACCGGCGATGCCGCTAACCTGCTCAAG
CCTGCCCTGGCGCGTGGGCAACTGCGCACCATCGGCGCGACCACCTGGGCGGAATACAAAAAATACATTGAGAAAGATCC
GGCGCTGACCCGCCGTTTCCAGACCGTACAGGTTCACGAGCCGGATGAAGCGAAAGCTGTATTGATGCTGCGCAGCACCG
TGTCGCCGCTGGAAACTCATCATCAGGTTTTACTCCTCGACGAAGCGGTCAGCGCGGCGGTGAAACTGTCGCATCGCTAT
ATTCCTGCGCGTCAGCTGCCGGATAAAGCGGTGGCGCTGCTGGATACCGCCTGCGCGCGCGTGGCCGTCAGCCAGAGCGC
GCCGCCTGCCCAGCTGGAAGACTGCCTGCGTCATCTGGCGGCCCTGGACGTGGAGCTGGAGATTGCCGAACGTGAAGCGC
GCGTGGGGGCGGGCGATCCGGCGCGCGTGGCGACATTAAGCGCCGAACGTGACGCGTTCGAAACCCAACGCGAGGCCCTG
GCTCGTCGCTGGGAAGAAGAGCGCACGCGGGTGCAGGAAATTATCCGTCTGCGTGCCGCACTGTTTGCGGCGAGTGATGA
GGATACGGCTGAACTGCGCGGCCAGCTGACAGAACAGCAGCAGGCGCTGAAGACCTTACAGGGTGACGAACCGCTGCTGT
TTGCGGCGGTCGATGAAAACGTGGTGGCTGCGGTGGTCTCAGACTGGACCGGGATCCCGCTGGGCCGGATGGTGAAAAAT
GAGATCGACGCGGTGCTGAACCTGGCTGATACGCTGAACCAGCGGGTTATTGGTCAGCGTCACGGTCTGGATCTGATTGC
CCGTCGGGTAAAAACCTCGCGGGCGAAGCTTGACGATCCGAACAAACCGGTCGGCGTATTTATGCTCTGCGGGCCGTCCG
GCGTGGGCAAAACCGAAACCGCGCTGGCGCTGGCGGAGTCGCTTTACGGCGGCGAGCAGAACGTCATTACCATCAACATG
AGTGAATTCCAGGAAGCGCACACCGTTTCGACGTTAAAAGGTGCGCCTCCGGGCTATGTGGGCTATGGTGAAGGCGGCGT
CTTAACCGAGGCCGTGCGCCGCCGTCCCTACAGCGTGGTGCTGCTGGATGAAATTGAAAAAGCGCACCCGGACGTGCACG
AGATCTTCTTCCAGGTCTTCGACAAGGGCTGGATGGAGGACGGTGAAGGGCGTCACATTGATTTCCGTAACACTATTATT
ATTCTGACCTCTAATGTCGGTACCGAGCTGATCGCAGCCATGTGCGCCGACCCGGAACTGATGCCGGATCCTGATGCGTT
AAGTGGCGCCCTGCGCCAGCCGCTACTGGAGGTGTTCCCACCTGCGCTGCTGGGCCGCCTGCTGGTGGTGCCGTATTACC
CTCTGAGCGACGAGATGCTGGGGCAGATTGTGCGTCTTCAGCTCAGGCGCATTCAGCGTCGTCTGGAAGAGAATCACAAT
ATTATTTCTGAATTTGACGACAGCGTGGTCGAACAGATTGTTCAGCGCTGTACCGAGGTTGAGTCGGGCGGGCGTATGGT
GGATGCGATTCTGACCAATACGTTGCTGCCTCAGATGAGCCAGATTTTACTTACCGCCAGCCGCAGCGACGAGCAATACC
GACGTCTGCATGTCACCTGCGAGCAGGGCGAGTTCCACTGTCAGTTTGCCGCGTAA