Detailed information of component protein


Summary

Component ID T6CP207878
Component protein type TssI
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (489 a.a.); Nucleotide sequence (1467 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS21315
Coordinate (Strand) 4469044..4470510 (-)
NCBI ID WP_023300317.1
RefSeq NZ_CP056118
Uniprot ID UPI0003BF99D8
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-488 MYNIKFVYLFHENVSPALFAKIIRPSVAGQWIMSVPDHSLRSLFTRYDLLRTITGANPYQSGRDTRTLIAQDLEMGRVVAIDESFRDWSSVTEIFYINAKGQLQAASLVGLGWYPVSTIVDRYETMVRTYGSRPAPTVLPKQVVKSKTAQVPDEPTPGKDGKTYAGQLQKMTKAERWQARKDLIAKGSNSLYPDAQIAAKRLAANNIAVEKAKLAENIYKTVNPLETTPDVPEGWTDISNDDALLGKFGLNKSMLFDDDTSPNFLARVYQPKPEVFGADMNPTLVFRGSREPGFASLSENVSSLLTKGELAPVVNGADWSNNFSQGMGMASDYYKKAVSIGKELARSGQNIDIAGHSLGGGLASATSMGSGKAGWTFNAAGLNAGTVEKYGGKILGSTDNIQAYRVEGELLTKIQEVNPWEDLKTMKGHVPSWILKEEISALSPNAAGIPHDLPGGTGSALDRHGINQAIDCIEQQKDEDISIIGSRL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9698 - -


  Protein sequence: 489 a.a.    

>T6CP207878 NZ_CP056118:c4470510-4469044 [Enterobacter sp. DSM 30060] [TssI]
MYNIKFVYLFHENVSPALFAKIIRPSVAGQWIMSVPDHSLRSLFTRYDLLRTITGANPYQSGRDTRTLIAQDLEMGRVVA
IDESFRDWSSVTEIFYINAKGQLQAASLVGLGWYPVSTIVDRYETMVRTYGSRPAPTVLPKQVVKSKTAQVPDEPTPGKD
GKTYAGQLQKMTKAERWQARKDLIAKGSNSLYPDAQIAAKRLAANNIAVEKAKLAENIYKTVNPLETTPDVPEGWTDISN
DDALLGKFGLNKSMLFDDDTSPNFLARVYQPKPEVFGADMNPTLVFRGSREPGFASLSENVSSLLTKGELAPVVNGADWS
NNFSQGMGMASDYYKKAVSIGKELARSGQNIDIAGHSLGGGLASATSMGSGKAGWTFNAAGLNAGTVEKYGGKILGSTDN
IQAYRVEGELLTKIQEVNPWEDLKTMKGHVPSWILKEEISALSPNAAGIPHDLPGGTGSALDRHGINQAIDCIEQQKDED
ISIIGSRL*

  Nucleotide sequence: 1467 bp    

>T6CP207878 NZ_CP056118:c4470510-4469044 [Enterobacter sp. DSM 30060] [TssI]
ATGTATAACATCAAGTTTGTCTATCTGTTCCACGAGAACGTCTCGCCAGCGCTGTTTGCGAAAATAATCCGCCCGTCCGT
TGCCGGACAGTGGATTATGTCGGTTCCCGACCATTCGCTGCGCTCGCTCTTCACGCGCTACGATCTGCTGCGCACGATCA
CCGGTGCGAATCCTTATCAGTCCGGGCGCGATACCCGCACGCTGATCGCGCAGGATTTAGAGATGGGCAGAGTGGTTGCC
ATTGACGAAAGTTTTCGTGACTGGTCATCAGTAACGGAAATTTTTTATATCAACGCCAAAGGGCAACTCCAGGCTGCCTC
GCTGGTCGGCCTGGGCTGGTATCCGGTGAGTACGATTGTTGACCGCTACGAAACCATGGTGAGAACGTACGGATCTCGCC
CTGCGCCAACGGTACTGCCAAAACAGGTAGTGAAATCTAAAACGGCACAGGTGCCGGATGAACCTACTCCCGGCAAGGAC
GGTAAAACCTATGCCGGGCAGCTTCAGAAGATGACCAAAGCAGAACGCTGGCAGGCGCGTAAGGATCTGATTGCGAAGGG
GAGCAATAGCCTTTATCCGGATGCCCAGATCGCCGCAAAACGTCTGGCAGCGAATAATATCGCGGTGGAAAAAGCGAAGC
TTGCGGAAAATATTTATAAGACCGTGAACCCGCTCGAAACCACACCGGACGTGCCGGAGGGTTGGACAGATATCAGTAAT
GACGATGCGCTGTTAGGAAAGTTCGGGCTGAACAAATCCATGCTCTTTGACGATGATACGTCCCCCAATTTTCTGGCGCG
CGTCTATCAACCGAAGCCGGAAGTGTTTGGTGCAGATATGAACCCCACGCTGGTATTCAGGGGATCGCGCGAGCCTGGTT
TCGCCTCTCTGTCTGAGAATGTCTCCTCTCTACTGACCAAAGGGGAACTGGCGCCGGTGGTAAACGGGGCTGACTGGTCG
AATAACTTCTCACAGGGCATGGGTATGGCTTCAGATTATTATAAAAAGGCCGTGAGTATCGGTAAGGAGCTGGCAAGGTC
AGGGCAGAATATTGATATTGCCGGTCATTCCCTTGGCGGTGGTCTCGCCTCTGCAACCTCTATGGGCAGCGGGAAAGCGG
GGTGGACGTTTAACGCCGCCGGCCTCAATGCCGGAACCGTAGAAAAATACGGCGGTAAGATATTAGGCAGTACGGATAAT
ATCCAGGCGTATCGGGTTGAAGGTGAACTGCTGACGAAGATTCAGGAAGTTAACCCCTGGGAAGATCTGAAAACGATGAA
AGGGCATGTCCCTTCGTGGATCCTCAAAGAGGAAATCTCTGCGCTGAGCCCTAATGCTGCCGGAATACCCCATGATCTTC
CCGGTGGAACCGGAAGCGCGCTGGACCGCCACGGAATTAATCAAGCGATTGATTGCATAGAGCAACAGAAGGATGAGGAT
ATTTCGATAATCGGGAGTCGATTGTGA