Detailed information of component protein


Summary

Component ID T6CP207877
Component protein type TssI
T6SS ID (Type) T6SS13923 experimental (Type i3)
Strain Enterobacter sp. DSM 30060
Replicon chromosome
Sequence Protein sequence (861 a.a.); Nucleotide sequence (2583 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) HWQ15_RS21300
Coordinate (Strand) 4465150..4467732 (-)
NCBI ID WP_063849903.1
RefSeq NZ_CP056118
Uniprot ID UPI000791AD58
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2e-85 22..327
Phage_base_V PF04717.14 3.8e-15 381..448
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-860 MLNRITVQLPVEGLLFWKLSGREAMSESFALTLTLLGTDARIDRSRLLGQPVTVTIPTQNLLTPRYINGKVTRVAVSAVELTGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTVPQIVKTLLGEHQVNLEDKLTGSYRVWDYCVQYQESSLDFISRLMELEGIAYHFSHEADKHTLVLTDAATQHQPFSGYEVIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQAQQNPASPKPGSIDVYDWPGRFVETGHAEFYARIRQERWQVEHQQIQATATAAGIAPGHIFTLTNAPFFSDNGEYLVTAAGYHFEENRYASGEGETIHRTDFTVIPAAVSYRPAQSTAWPRTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDDTSSCWVRVSSAWAGQGYGGVQIPRVGDEVVVDFINGDPDRPIITGRVYNEASMPPWALPAAATQMGFMSRTKDGSVDNANALRFEDKAGAEQVWIQAERNMDTSVKNDETHSVGGERSHYVKKNELHRVEANQIQAVKGGTEILTGKGKLDAAVEQYVIASGTKLRLVSGESAIELNANGKINLIGKEFNFFVEGDGYITTGGKLHLNTSGTKPGTTAPGSGHKGDIDAAVQEKFSPNKSAKNPAPAVSAPAASRPKPTTKFAAAPPLKGSYVYQNNSYNSDVMPFSEDVVKEINKSPTLQTQLKDLKDKGWAIQPGAAGGGSYADTNNKLIVMDPEHMEDTATTVQTLAHEAGHATYPVAVDASSKENFINSQLMDEGGATLNNIKIQREILANGGIDIDIAGSAENLKAYNSAYDKMVSGELSRIDAAKAIGKVYGKGEIASGTNLNYNDYYGGFYGK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9479 - -


  Protein sequence: 861 a.a.    

>T6CP207877 NZ_CP056118:c4467732-4465150 [Enterobacter sp. DSM 30060] [TssI]
MLNRITVQLPVEGLLFWKLSGREAMSESFALTLTLLGTDARIDRSRLLGQPVTVTIPTQNLLTPRYINGKVTRVAVSAVE
LTGTRYAVYQLTVEPDLWPMKRDRNLRIFQGQTVPQIVKTLLGEHQVNLEDKLTGSYRVWDYCVQYQESSLDFISRLMEL
EGIAYHFSHEADKHTLVLTDAATQHQPFSGYEVIPYHQTPSGGSTDEEGISQWALEDSVTPGIYSLDDYDFRKPNAWLFQ
AQQNPASPKPGSIDVYDWPGRFVETGHAEFYARIRQERWQVEHQQIQATATAAGIAPGHIFTLTNAPFFSDNGEYLVTAA
GYHFEENRYASGEGETIHRTDFTVIPAAVSYRPAQSTAWPRTYGPQTAKVVGPQGESIWTDKYGRVKVKFHWDRLAKGDD
TSSCWVRVSSAWAGQGYGGVQIPRVGDEVVVDFINGDPDRPIITGRVYNEASMPPWALPAAATQMGFMSRTKDGSVDNAN
ALRFEDKAGAEQVWIQAERNMDTSVKNDETHSVGGERSHYVKKNELHRVEANQIQAVKGGTEILTGKGKLDAAVEQYVIA
SGTKLRLVSGESAIELNANGKINLIGKEFNFFVEGDGYITTGGKLHLNTSGTKPGTTAPGSGHKGDIDAAVQEKFSPNKS
AKNPAPAVSAPAASRPKPTTKFAAAPPLKGSYVYQNNSYNSDVMPFSEDVVKEINKSPTLQTQLKDLKDKGWAIQPGAAG
GGSYADTNNKLIVMDPEHMEDTATTVQTLAHEAGHATYPVAVDASSKENFINSQLMDEGGATLNNIKIQREILANGGIDI
DIAGSAENLKAYNSAYDKMVSGELSRIDAAKAIGKVYGKGEIASGTNLNYNDYYGGFYGK*

  Nucleotide sequence: 2583 bp    

>T6CP207877 NZ_CP056118:c4467732-4465150 [Enterobacter sp. DSM 30060] [TssI]
ATGCTCAACCGAATTACCGTTCAGCTCCCGGTTGAGGGGCTGCTTTTCTGGAAACTCTCCGGCCGCGAGGCGATGTCGGA
GTCGTTCGCGCTGACGCTGACCCTGCTCGGCACGGATGCGCGCATTGACCGCAGCAGGCTGCTCGGTCAGCCGGTCACGG
TGACCATCCCCACCCAGAACCTGCTTACCCCCCGCTATATCAACGGCAAGGTGACGCGCGTGGCGGTGAGTGCCGTGGAG
CTGACGGGCACCCGCTATGCGGTCTACCAGCTGACGGTGGAGCCGGACCTGTGGCCGATGAAGCGCGACCGTAACCTGCG
GATTTTCCAGGGCCAGACGGTACCGCAGATTGTGAAAACCCTGCTGGGTGAGCATCAGGTTAACCTCGAAGACAAACTCA
CCGGCAGCTACCGGGTGTGGGACTACTGCGTGCAGTATCAGGAATCGAGCCTGGACTTCATCAGCCGCCTGATGGAGCTG
GAGGGGATTGCGTATCACTTCAGCCACGAGGCGGACAAGCACACCCTGGTACTGACCGACGCCGCGACGCAGCATCAGCC
GTTCAGCGGCTATGAGGTCATTCCTTACCATCAGACGCCGTCCGGCGGCAGTACGGATGAAGAGGGCATCAGCCAGTGGG
CGCTGGAGGACAGCGTGACGCCGGGGATTTACAGCCTCGACGACTACGACTTCCGCAAGCCGAACGCGTGGCTGTTCCAG
GCGCAGCAGAACCCGGCGTCACCGAAACCGGGCAGCATCGACGTGTACGACTGGCCGGGCCGCTTTGTGGAGACAGGCCA
TGCGGAGTTCTACGCCCGCATTCGTCAGGAGCGCTGGCAGGTGGAGCATCAGCAGATTCAGGCGACGGCCACGGCGGCGG
GCATTGCGCCGGGCCACATCTTTACCCTGACCAACGCGCCATTCTTCAGCGATAACGGTGAGTATCTGGTGACGGCGGCC
GGGTATCACTTCGAGGAGAACCGCTACGCGAGCGGCGAGGGGGAAACCATTCACCGCACCGATTTCACCGTTATCCCGGC
GGCGGTGTCGTACCGTCCGGCGCAGAGCACGGCGTGGCCGCGGACCTACGGCCCGCAGACGGCGAAAGTCGTGGGGCCGC
AGGGGGAGAGTATCTGGACGGACAAATATGGCCGCGTGAAGGTGAAGTTCCACTGGGACAGGCTGGCGAAGGGTGACGAC
ACCAGTTCCTGCTGGGTGCGTGTCTCCAGCGCATGGGCGGGCCAGGGCTACGGCGGGGTGCAAATCCCGCGCGTCGGCGA
TGAGGTGGTGGTGGACTTTATCAACGGTGACCCGGACCGACCGATTATCACCGGGCGCGTGTATAACGAGGCGAGCATGC
CGCCGTGGGCGCTGCCGGCTGCGGCGACGCAGATGGGCTTTATGAGCCGTACGAAAGACGGTTCAGTGGACAACGCCAAC
GCCCTGCGCTTTGAGGACAAGGCGGGAGCAGAGCAGGTGTGGATCCAGGCCGAGCGCAACATGGACACCAGCGTCAAGAA
TGATGAAACGCACAGCGTTGGCGGCGAGCGCAGCCATTACGTGAAGAAAAATGAGCTGCATCGTGTTGAAGCGAACCAGA
TCCAGGCCGTGAAAGGCGGAACCGAGATCCTGACGGGAAAAGGCAAGCTGGATGCAGCGGTAGAGCAGTATGTCATTGCT
TCCGGGACGAAGCTGCGGCTGGTCTCGGGTGAGAGTGCTATTGAGCTTAACGCTAACGGCAAGATTAACCTGATTGGCAA
AGAGTTTAACTTTTTCGTTGAGGGAGATGGGTATATCACCACGGGTGGTAAGCTGCATCTGAATACCTCGGGAACCAAGC
CGGGCACAACGGCACCGGGATCGGGGCATAAAGGGGATATTGATGCGGCGGTGCAGGAGAAGTTTTCTCCAAATAAAAGT
GCTAAGAATCCGGCTCCCGCAGTTTCAGCGCCAGCAGCATCCAGACCAAAACCAACAACAAAATTTGCAGCAGCTCCACC
ATTAAAAGGGAGTTACGTTTATCAAAATAATTCCTACAACTCTGATGTGATGCCCTTCAGTGAAGATGTAGTTAAGGAAA
TCAATAAGTCACCAACGCTTCAGACACAATTAAAAGATCTAAAAGATAAAGGGTGGGCTATCCAGCCGGGAGCCGCAGGA
GGAGGGAGTTACGCTGATACTAATAACAAATTGATTGTCATGGACCCTGAACACATGGAGGATACAGCCACAACTGTGCA
AACTCTGGCACATGAGGCAGGGCATGCAACTTATCCTGTTGCGGTAGATGCTTCGAGTAAGGAAAACTTCATCAACAGCC
AGCTTATGGATGAAGGTGGAGCAACGCTGAATAACATTAAAATACAACGCGAGATCCTTGCAAACGGCGGTATTGATATT
GATATAGCGGGAAGTGCCGAAAACCTAAAAGCATATAATTCTGCATATGATAAAATGGTGAGCGGTGAGTTATCTCGCAT
TGATGCAGCCAAAGCAATAGGAAAAGTGTATGGTAAAGGCGAAATAGCCTCAGGGACTAATTTAAATTATAATGATTACT
ATGGAGGATTCTATGGAAAGTAG