Detailed information of component protein


Summary

Component ID T6CP016250
Component protein type TssA
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (358 a.a.); Nucleotide sequence (1074 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29710
Coordinate (Strand) 84909..85982 (-)
NCBI ID 836691997
GenBank LEKY01000074
Uniprot ID UPI000649D4DF
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.3e-34 13..135
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-357 MTLSDSTDPNPLLAAIDDAAPTGPDLEYDPAFTDLERIAMPTPERAMGDSLKAAQEPDWDKVAQAAEALFSRTKDLRVAVHLTAARTRRQGLAGWASGLALVRELLERYWDDVHPRLDAEDDNDPTARVNAVMPLGDPQGTLAYFRVVPFVQSPRLGRFSLRDLRVATGAITAAPSADGAPPPTLVDLEACCLDCPEEQLPEAAALLAAAQDHADALIALLRERLGTASPDFGLLAADIAELRKFVDAQLLRRFPERAAELAAAAPADGADGEIPADMAAAAAAVAPPPGKISGHDDVIRRLDEICEYYERIEPSSPLPILLKRARRLVGKSFVEVLRDIAPGGLSELQTLSGPEAD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9851 - -


  Protein sequence: 358 a.a.    

>T6CP016250 LEKY01000074:c85982-84909 [Burkholderia gladioli] [TssA]
MTLSDSTDPNPLLAAIDDAAPTGPDLEYDPAFTDLERIAMPTPERAMGDSLKAAQEPDWDKVAQAAEALFSRTKDLRVAV
HLTAARTRRQGLAGWASGLALVRELLERYWDDVHPRLDAEDDNDPTARVNAVMPLGDPQGTLAYFRVVPFVQSPRLGRFS
LRDLRVATGAITAAPSADGAPPPTLVDLEACCLDCPEEQLPEAAALLAAAQDHADALIALLRERLGTASPDFGLLAADIA
ELRKFVDAQLLRRFPERAAELAAAAPADGADGEIPADMAAAAAAVAPPPGKISGHDDVIRRLDEICEYYERIEPSSPLPI
LLKRARRLVGKSFVEVLRDIAPGGLSELQTLSGPEAD*

  Nucleotide sequence: 1074 bp    

>T6CP016250 LEKY01000074:c85982-84909 [Burkholderia gladioli] [TssA]
ATGACCCTTTCCGACTCGACCGACCCGAACCCGCTGCTCGCCGCGATCGACGACGCGGCGCCCACCGGCCCCGATCTCGA
ATACGACCCCGCCTTCACCGATCTCGAGCGGATCGCCATGCCCACTCCCGAGCGCGCCATGGGCGACAGCCTGAAGGCCG
CCCAGGAGCCCGACTGGGACAAGGTCGCGCAAGCGGCCGAGGCGCTGTTCTCGCGCACCAAGGACCTGCGCGTGGCCGTG
CACCTGACCGCCGCGCGCACGCGCCGCCAGGGCCTGGCGGGCTGGGCCTCGGGCCTGGCCCTGGTGCGCGAGCTGCTGGA
GCGCTACTGGGACGACGTGCATCCCCGGCTCGACGCCGAGGACGACAACGACCCGACCGCGCGCGTCAACGCGGTGATGC
CGCTGGGCGACCCGCAAGGCACGCTGGCCTATTTCCGGGTGGTGCCCTTCGTGCAGTCGCCGCGGCTCGGCCGCTTCTCG
CTGCGCGACCTGCGCGTGGCGACCGGCGCGATCACCGCCGCGCCCTCGGCCGACGGCGCGCCGCCGCCGACCCTGGTCGA
CCTGGAGGCCTGCTGCCTCGACTGCCCCGAGGAGCAGTTGCCGGAAGCGGCCGCGCTGCTGGCCGCCGCGCAGGATCACG
CCGACGCGCTGATTGCCCTGCTGCGCGAGCGGCTCGGCACCGCGAGCCCCGATTTCGGGCTGCTGGCCGCGGATATCGCC
GAGCTGAGGAAATTCGTCGATGCCCAGTTGTTGCGGCGCTTTCCCGAGCGCGCGGCCGAGCTGGCCGCCGCCGCGCCGGC
GGACGGCGCCGACGGCGAGATACCGGCCGATATGGCAGCGGCAGCCGCGGCCGTGGCACCGCCGCCCGGCAAGATCTCGG
GCCACGACGACGTGATCCGCCGCCTCGACGAGATCTGTGAGTATTACGAACGAATCGAGCCGTCCAGCCCGCTGCCGATC
CTGCTCAAGCGCGCGCGGCGCCTGGTCGGCAAGAGCTTCGTCGAGGTCCTGCGGGATATCGCGCCGGGCGGGCTGTCGGA
GTTGCAGACGCTGTCGGGGCCCGAGGCCGATTGA