Detailed information of component protein


Summary

Component ID T6CP016249
Component protein type TagF
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (548 a.a.); Nucleotide sequence (1644 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29690
Coordinate (Strand) 79045..80688 (+)
NCBI ID 836691994
GenBank LEKY01000074
Uniprot ID UPI00064B1E13
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TagF_N PF09867.11 3.4e-35 6..135
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-547 MSGGVGFYGKLPGAGDFVKRRLPVDFIEAWDRHFQRAVETGRRELGERWGEAWRNGPAWRFVLPPQVCGSGAWCGLTGPAVDRLGRAFPMVLAAPCTGDVARILGNSDWFDALERVWRQAQREAASVETFDARVAVLPRPLAEAGDLSALWRGLPWDSGQWRLDMSGAAAAGVMLTEAWRQLCLRPGPWCLWWTGNATRLFATRGLPRSHAVLLDAPPPGEAASVARMGGIADDIVDAFDVFDAIGAAPGLANAAAAEAWAPTAPAAPAAVAPATIHEDWLDDDATVERVRPAASLPLGLRRAHAEALADGAIGAQAIEAPFAADAGPGTAAPLDADHGAEHGSDSAAIWLDDGRTLVLSADDMPPDGTRRLAARAIREAAAVGAAAPEAIRAALLGVHARLREGGATRENGAALVARFDGATALVQRFGAAAVWHWRQGVLSAPFVERAAGAGGEFDDLLFGEAWLDMPGIGAAGEPDCESVAIHLAPGDRLLLLATRAMTQLPREALAAALALPGCETAREALAAHAGLAGASAGWPLAVVEVQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 548 a.a.    

>T6CP016249 LEKY01000074:79045-80688 [Burkholderia gladioli] [TagF]
MSGGVGFYGKLPGAGDFVKRRLPVDFIEAWDRHFQRAVETGRRELGERWGEAWRNGPAWRFVLPPQVCGSGAWCGLTGPA
VDRLGRAFPMVLAAPCTGDVARILGNSDWFDALERVWRQAQREAASVETFDARVAVLPRPLAEAGDLSALWRGLPWDSGQ
WRLDMSGAAAAGVMLTEAWRQLCLRPGPWCLWWTGNATRLFATRGLPRSHAVLLDAPPPGEAASVARMGGIADDIVDAFD
VFDAIGAAPGLANAAAAEAWAPTAPAAPAAVAPATIHEDWLDDDATVERVRPAASLPLGLRRAHAEALADGAIGAQAIEA
PFAADAGPGTAAPLDADHGAEHGSDSAAIWLDDGRTLVLSADDMPPDGTRRLAARAIREAAAVGAAAPEAIRAALLGVHA
RLREGGATRENGAALVARFDGATALVQRFGAAAVWHWRQGVLSAPFVERAAGAGGEFDDLLFGEAWLDMPGIGAAGEPDC
ESVAIHLAPGDRLLLLATRAMTQLPREALAAALALPGCETAREALAAHAGLAGASAGWPLAVVEVQA*

  Nucleotide sequence: 1644 bp    

>T6CP016249 LEKY01000074:79045-80688 [Burkholderia gladioli] [TagF]
ATGAGCGGCGGCGTGGGGTTCTACGGCAAGCTGCCGGGCGCCGGCGATTTCGTGAAGCGGCGCCTGCCGGTCGATTTCAT
CGAGGCCTGGGATCGGCATTTCCAGCGCGCGGTCGAGACCGGCCGGCGCGAGCTCGGCGAACGCTGGGGCGAGGCCTGGC
GCAACGGCCCGGCCTGGCGTTTCGTGCTGCCGCCGCAGGTGTGCGGCAGCGGCGCCTGGTGCGGCCTGACCGGGCCCGCG
GTCGACCGGCTCGGCCGCGCCTTCCCGATGGTGCTGGCCGCGCCCTGCACGGGCGACGTGGCGCGCATCCTCGGCAACAG
CGACTGGTTCGACGCGCTCGAACGCGTCTGGCGCCAGGCGCAGCGCGAGGCCGCCAGCGTCGAGACCTTCGACGCGCGGG
TGGCCGTGCTGCCGCGGCCGCTGGCCGAGGCGGGCGATCTCTCGGCGCTATGGCGCGGGCTGCCCTGGGACAGCGGGCAA
TGGCGGCTCGACATGTCGGGCGCGGCCGCCGCCGGCGTGATGCTGACCGAGGCCTGGCGCCAGCTGTGCCTGCGCCCCGG
GCCCTGGTGCCTGTGGTGGACCGGCAACGCCACGCGCCTGTTCGCGACGCGCGGCCTGCCGCGCAGCCATGCGGTGCTGC
TCGACGCGCCGCCGCCGGGCGAGGCCGCAAGCGTGGCTCGCATGGGTGGGATCGCCGACGACATCGTCGATGCGTTCGAT
GTGTTCGATGCGATCGGTGCTGCGCCGGGGCTGGCGAATGCCGCCGCCGCCGAAGCCTGGGCGCCGACGGCACCCGCGGC
GCCGGCCGCGGTTGCGCCCGCGACGATCCACGAGGACTGGCTCGACGATGACGCCACCGTGGAGAGGGTCCGGCCGGCCG
CCTCGCTGCCGCTTGGCTTGCGGCGCGCGCATGCCGAAGCGCTGGCCGATGGTGCGATCGGCGCGCAGGCGATCGAGGCG
CCTTTCGCCGCGGATGCGGGACCAGGCACGGCGGCCCCGCTCGATGCGGATCATGGCGCCGAGCATGGTTCCGACAGCGC
CGCGATCTGGCTCGACGACGGCCGCACCCTGGTGCTCAGCGCCGACGACATGCCGCCCGACGGCACGCGCCGCCTGGCGG
CGCGTGCGATCCGCGAAGCGGCCGCCGTCGGCGCCGCCGCGCCCGAGGCGATCCGCGCCGCGCTGCTGGGCGTGCACGCG
CGCCTGCGCGAGGGCGGCGCGACGCGGGAGAACGGCGCCGCGCTGGTGGCCCGCTTCGACGGTGCCACGGCCCTGGTGCA
GCGCTTCGGCGCCGCCGCCGTCTGGCATTGGCGGCAGGGCGTGCTGAGCGCGCCCTTCGTCGAGCGCGCGGCCGGCGCCG
GCGGTGAATTCGACGACCTGCTGTTCGGCGAGGCCTGGCTCGACATGCCGGGCATCGGCGCGGCCGGCGAGCCCGATTGC
GAATCGGTCGCGATCCATCTCGCGCCGGGCGACCGGCTGCTGTTGCTGGCCACGCGCGCCATGACGCAATTGCCGCGCGA
GGCGCTGGCCGCGGCGCTGGCGCTGCCGGGCTGCGAGACGGCGCGCGAGGCGCTGGCCGCGCACGCCGGGCTCGCCGGCG
CCTCGGCCGGCTGGCCGCTCGCGGTGGTGGAGGTGCAGGCATGA