Detailed information of component protein


Summary

Component ID T6CP016246
Component protein type TssK
T6SS ID (Type) T6SS01301 experimental (Type i3)
Strain Burkholderia gladioli strain NGJ1
Replicon chromosome
Sequence Protein sequence (446 a.a.); Nucleotide sequence (1338 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ACI79_RS29675
Coordinate (Strand) 72698..74035 (+)
NCBI ID 836691991
GenBank LEKY01000074
Uniprot ID UPI00064A0CFF
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 7.2e-150 19..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-445 MTQSNKVVWSEGLFLRPQHMQQQERYLERYVELRAGALRPHAWGFQELELESDLLAIGKLGIKRARGVFPDGTPFAMPGDDPLPPPLDIESNWRDQVVHLTLPLRSATQPDSAWPGADGDQLYRYRVREAEVRDASGSMEGLTALEVAGMSARLVPEAQPTEGLMRIPVARVVECRADRRVVLDEGFMPSALNTEAAARLVTFLSELLGLLHQRGEALAGRVAETDRGGAAEIADFLMLQVINRYQPLVAHLAAAPLLHPEALYQLLIELAGELATFTAPGKRAQAFPPYRHEMLRESFEPVIVALRIALSAVLEQSAVPIPLQQRKYGVWVGVVPDLTLLDTATFVLAAKADMKAEDMRRQLPTQSKIGPVEKIRDLVNLQLPGIGVTPMAVAPRQLPYTSGFLYFECDRNSSMWRMLKTSGGIAMHFGSGFAGLDLQFWAVRT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9974 - -


  Protein sequence: 446 a.a.    

>T6CP016246 LEKY01000074:72698-74035 [Burkholderia gladioli] [TssK]
MTQSNKVVWSEGLFLRPQHMQQQERYLERYVELRAGALRPHAWGFQELELESDLLAIGKLGIKRARGVFPDGTPFAMPGD
DPLPPPLDIESNWRDQVVHLTLPLRSATQPDSAWPGADGDQLYRYRVREAEVRDASGSMEGLTALEVAGMSARLVPEAQP
TEGLMRIPVARVVECRADRRVVLDEGFMPSALNTEAAARLVTFLSELLGLLHQRGEALAGRVAETDRGGAAEIADFLMLQ
VINRYQPLVAHLAAAPLLHPEALYQLLIELAGELATFTAPGKRAQAFPPYRHEMLRESFEPVIVALRIALSAVLEQSAVP
IPLQQRKYGVWVGVVPDLTLLDTATFVLAAKADMKAEDMRRQLPTQSKIGPVEKIRDLVNLQLPGIGVTPMAVAPRQLPY
TSGFLYFECDRNSSMWRMLKTSGGIAMHFGSGFAGLDLQFWAVRT*

  Nucleotide sequence: 1338 bp    

>T6CP016246 LEKY01000074:72698-74035 [Burkholderia gladioli] [TssK]
ATGACCCAGAGCAATAAAGTGGTATGGAGCGAGGGCCTGTTCCTGCGGCCCCAGCACATGCAGCAGCAGGAGCGCTACCT
GGAGCGCTACGTGGAGCTGCGCGCCGGCGCGCTGCGTCCGCACGCGTGGGGCTTCCAGGAGCTCGAGCTGGAGAGCGACC
TGCTCGCGATCGGCAAGCTCGGCATCAAGCGCGCGCGCGGCGTGTTCCCCGACGGAACGCCGTTCGCGATGCCCGGCGAC
GATCCGCTGCCGCCGCCGCTGGACATCGAATCGAACTGGCGCGACCAGGTGGTGCACCTGACCTTGCCGCTGCGCTCGGC
CACCCAGCCCGACAGCGCCTGGCCCGGCGCCGATGGCGACCAGTTGTATCGCTACCGGGTGCGCGAGGCCGAGGTGCGCG
ACGCCTCGGGCAGCATGGAAGGGCTGACCGCGCTGGAGGTGGCCGGCATGAGCGCGCGCCTGGTGCCCGAGGCGCAGCCC
ACCGAGGGCCTGATGCGGATCCCGGTGGCGCGCGTGGTGGAGTGCCGTGCCGATCGCCGCGTGGTGCTCGACGAGGGCTT
CATGCCCAGCGCGCTGAACACCGAGGCGGCCGCGCGGCTGGTGACCTTCCTCTCCGAGCTGCTGGGCCTGCTGCATCAGC
GCGGCGAGGCGCTGGCCGGGCGCGTGGCCGAGACCGATCGCGGCGGCGCGGCCGAGATCGCCGACTTCCTGATGCTGCAG
GTGATCAACCGCTACCAGCCGCTGGTGGCGCACCTGGCCGCCGCGCCGCTCTTGCATCCCGAGGCGCTCTATCAGTTGCT
GATCGAGCTGGCCGGCGAGCTGGCCACCTTCACGGCGCCGGGCAAGCGCGCGCAGGCCTTCCCACCGTATCGCCACGAGA
TGCTGCGCGAGAGCTTCGAGCCGGTGATCGTGGCGCTGCGCATCGCGCTGAGCGCGGTGCTCGAGCAGAGCGCCGTGCCG
ATCCCGCTGCAGCAGCGCAAGTACGGCGTGTGGGTGGGCGTGGTGCCCGACCTCACGCTGCTCGACACCGCCACCTTCGT
GCTGGCCGCCAAGGCCGACATGAAGGCCGAGGACATGCGCCGGCAGTTGCCGACGCAATCGAAGATCGGCCCGGTCGAGA
AGATCCGCGACCTGGTCAACCTGCAACTGCCCGGCATCGGCGTTACGCCGATGGCCGTGGCCCCGCGCCAACTGCCCTAC
ACCTCCGGCTTCCTCTACTTCGAATGCGACCGCAATTCGTCGATGTGGCGGATGCTGAAGACCTCGGGCGGCATCGCCAT
GCATTTCGGCAGCGGCTTCGCGGGCCTCGACCTGCAATTCTGGGCGGTGCGCACATGA